Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02870 515 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 489 / 5e-173 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 474 / 2e-167 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 432 / 2e-150 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 296 / 1e-97 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 199 / 1e-59 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 181 / 3e-53 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 87 / 6e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 86 / 3e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 75 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036735 [exp] 664 / 0 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 571 / 0 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10030489 [exp] 556 / 0 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 352 / 8e-120 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 325 / 3e-109 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 323 / 1e-108 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 147 / 4e-41 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 86 / 6e-18 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 84 / 2e-17 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063200 [exp] 478 / 5e-168 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.019G042100 [exp] 350 / 2e-118 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 350 / 3e-118 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 231 / 7e-72 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 211 / 4e-64 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 100 / 3e-23 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G091900 [exp] 96 / 3e-21 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 88 / 5e-19 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G170000 [exp] 85 / 7e-18 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 84 / 1e-17 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10037196 pacid=23152351 polypeptide=Lus10037196 locus=Lus10037196.g ID=Lus10037196.BGIv1.0 annot-version=v1.0 ATGTTGGAAGGCCGGTCCTGGGATTCCTGCCTGGTGACTAGAGTGTTTGGTGGTCCTGGGATTCAGGCCAGTCAATCATCTGATTCGACCACCCTTATTG ACGCAATCGGATGGGACAATTCGATTAACTGTATCTTACGAATCTCTCGATCCGATTACGGATCCCTAGCTTCGCTCAACCGAAATTTCCGGTCCTTATT CCGGAGTGGGGACATATACAAGCTGAGGAGGCAGCGGGGAGTGATCGAACACTGGGTCTATTTCTCGTGCCACTTGCTCGAGTGGGAGGCCTTCGATCCG ATTAGCCACAGGTGGATGAATTTGCCGAGAATGCCGGCCAACGAATGTTTCATGTGGTCCGATAAGGAGTCGTTGGCCGTGGGGACGGAACTCCTCGTAT TTGGTAAGGAAGTGATGTCCCATTACATATATAGATACAGCATTTTGACGAATTCATGGACTTTCGGGATGAAGATGAACTTCCCTAGATGCTTGTTTGG TTCCGCCAGTCTGGGAGAGATTGCAATTTTGGCCGGAGGATGCGATTCTCAAGGGGTCCTCAGTTGCGCTGAAATGTACAATTCCGAAACTCACACTTGG CTGACGCTCCCGAGCATGAATAAACCGAGGAAGATGTGCTCGGCGGTGTTTATGGATGGAAAATTCTACGTGATTGGCGGAATCGGTGCGAACAATGGCG ATGTACTTACTTGCGGAGAAGAATACGACTTGGAAGCGAAGAAATGGACAGAAATTCCTAATATGTCCCCCGGGAGGATCATTCCTCCCGTCGAGGGAAT GCCTGCGGCTGCTGGTGCTCCGCCGTTACTCGCTGTAGTAAATAACCAACTCTACGCTGCCGATCATAGCGATATGGAGGTGAAGAGGTACGATAAAGAA CGAAAAGTGTGGGTTACTCTTGGAAGGTTGCCTGAACGTGTGTGCTCGATGAACGGTTGGGGGCTCGCGTTCAGGGCTTGTGGGGATCGGCTGATTGTGC TCGGTGGACCTAGGACGTCGGGAGAAGGTGTCATCGAGCTGAACTCGTGGGTGCCGAGTGAAGAAGGGGTGCCTCGATGGGACTTGCTCGAGAGGAATCT GTCGGTCAATTTTGTGTATAATTGCGCGGTGATGGGATGCTGA
AA sequence Show only first row Show all	>Lus10037196 pacid=23152351 polypeptide=Lus10037196 locus=Lus10037196.g ID=Lus10037196.BGIv1.0 annot-version=v1.0 MLEGRSWDSCLVTRVFGGPGIQASQSSDSTTLIDAIGWDNSINCILRISRSDYGSLASLNRNFRSLFRSGDIYKLRRQRGVIEHWVYFSCHLLEWEAFDP ISHRWMNLPRMPANECFMWSDKESLAVGTELLVFGKEVMSHYIYRYSILTNSWTFGMKMNFPRCLFGSASLGEIAILAGGCDSQGVLSCAEMYNSETHTW LTLPSMNKPRKMCSAVFMDGKFYVIGGIGANNGDVLTCGEEYDLEAKKWTEIPNMSPGRIIPPVEGMPAAAGAPPLLAVVNNQLYAADHSDMEVKRYDKE RKVWVTLGRLPERVCSMNGWGLAFRACGDRLIVLGGPRTSGEGVIELNSWVPSEEGVPRWDLLERNLSVNFVYNCAVMGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	0	1
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	2.2	0.9323
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	3.6	0.9171
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	4.2	0.9224
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10014631 [exp]	4.5	0.9196
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	7.1	0.9416
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10027639 [exp]	8.1	0.9087
AT3G01360			Family of unknown function (DU...		Lus10028821 [exp]	8.9	0.9325
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	11.3	0.9154
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	14.3	0.9025
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	14.8	0.8968

Compare expression of checked genes

Lus10037196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.