Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26940 367 / 2e-130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G36130 68 / 5e-14 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 69 / 3e-13 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT1G01940 64 / 9e-13 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G33060 63 / 2e-11 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G53720 60 / 3e-10 ATCYP59, CYP59 cyclophilin 59 (.1) AT5G67530 58 / 7e-10 ATPUB49 plant U-box 49 (.1) AT3G63400 56 / 3e-09 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G15790 56 / 6e-09 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G62030 48 / 2e-06 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036733 [exp] 177 / 5e-57 AT1G26940 151 / 5e-47 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009237 [exp] 69 / 3e-14 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 66 / 2e-12 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 66 / 2e-12 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10018746 [exp] 63 / 3e-11 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 63 / 3e-11 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10021335 [exp] 59 / 1e-10 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027924 [exp] 60 / 2e-10 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10012059 [exp] 59 / 4e-10 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012900 [exp] 373 / 5e-133 AT1G26940 368 / 6e-131 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 66 / 2e-13 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 67 / 1e-12 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.002G149700 [exp] 60 / 4e-11 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 59 / 5e-11 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G097500 [exp] 59 / 4e-10 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.005G148900 [exp] 58 / 1e-09 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.004G144300 [exp] 57 / 2e-09 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.018G061700 [exp] 54 / 2e-08 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G185200 [exp] 53 / 4e-08 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10037197 pacid=23152484 polypeptide=Lus10037197 locus=Lus10037197.g ID=Lus10037197.BGIv1.0 annot-version=v1.0 ATGACGAGAATGTGGATCTTAGTCGTAGGTTTGGCAATTGCAGCGGCGGCCGGCGTCTCATTAGCGGAGCCTGAGCTCAGCTCAGCTCGTGTTGTCTTCC AGACCAATTACGGGGATATCGAGTTCGGGTTCTATCCATCGGTGGCGCCGATAACGGTGGAGCACATTTTCAAGCTTGTTCGGCTTGGAGGATACAACAC TAATCACTTCTTCAGGGTTGACAAGGGATTTGTGGCTCAAGTAGCGGATGTTGCTGGTGGGCGATCGGCTCCGATGAACGAAGAGCAAAGACTGGAGGCA GAGAAGACTGTGATTGGTGAATTTAGTGACGTTAAGCATGTTCGAGGCATCCTGTCCATGGGGAGGTATGCTGATCCAAACAGTGGATCATCCTCGTTCT CGATCCTTCTTGGGAATGCACCTCATCTTGACGGCCAATATGCTATATTTGGTAAAGTTACCAAAGGTGATGACACATTAACTAAGCTGGAGCAGCTTCC TACCCGGACTGAAGGAATCTTTGTGATGCCAACAGAACGGATCACTATTTTGTCATCATATTACTACGATACTAACATGGAGAAGTGCGATGAGGAGAGG TCGATCTTGAAACGCAGACTCGCCGCATCTGCTATTGAAGTCGAAAGACAGAGAATGAAATGCTTCCCGTGA
AA sequence Show only first row Show all	>Lus10037197 pacid=23152484 polypeptide=Lus10037197 locus=Lus10037197.g ID=Lus10037197.BGIv1.0 annot-version=v1.0 MTRMWILVVGLAIAAAAGVSLAEPELSSARVVFQTNYGDIEFGFYPSVAPITVEHIFKLVRLGGYNTNHFFRVDKGFVAQVADVAGGRSAPMNEEQRLEA EKTVIGEFSDVKHVRGILSMGRYADPNSGSSSFSILLGNAPHLDGQYAIFGKVTKGDDTLTKLEQLPTRTEGIFVMPTERITILSSYYYDTNMEKCDEER SILKRRLAASAIEVERQRMKCFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	0	1
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	11.0	0.8628
AT1G76200			unknown protein		Lus10016001 [exp]	11.2	0.8372
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	13.9	0.8366
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	16.7	0.8511
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	19.7	0.8580
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10018052 [exp]	19.7	0.8299
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	23.1	0.8590
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10014299 [exp]	25.0	0.7890
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	25.9	0.8255
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	28.4	0.8388

Compare expression of checked genes

Lus10037197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.