Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26945 94 / 8e-27 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G28857 85 / 4e-23 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G39860 84 / 1e-22 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G74500 82 / 7e-22 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) AT3G47710 76 / 2e-19 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) AT5G15160 74 / 1e-18 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036732 [exp] 118 / 4e-36 AT1G26945 115 / 6e-35 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012842 [exp] 101 / 3e-29 AT3G28857 103 / 3e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030490 [exp] 97 / 2e-27 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024241 [exp] 76 / 1e-19 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10023610 [exp] 71 / 1e-17 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10008626 [exp] 47 / 3e-08 AT3G28857 71 / 1e-17 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081300 [exp] 91 / 1e-25 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.004G128400 [exp] 91 / 1e-25 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.012G069500 [exp] 85 / 6e-23 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.015G063300 [exp] 84 / 2e-22 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037198 pacid=23152613 polypeptide=Lus10037198 locus=Lus10037198.g ID=Lus10037198.BGIv1.0 annot-version=v1.0 ATGTCGAGCAGGAGATCATCCTCGTCGAGGTCAAGACAATCCTCGAGGAGCATAATATCTGACGATCAGATCATTGACCTCATCTCCAAGTTGCAACGCC TCATCCCTGAAGCTCGTTCCTCCTCTCGCCGCTCTCGTGACAAGGGTTCGGCATCGAAGGTGTTGCAAGAGACGTGCAACTACATAAAGGATTTGCACAG GGAAGTTGACGATCTAAGCGACCGGTTATCGGAGCTTCTGGCGACAACAGATTCCGACAGCGCCCAAGCCGCCATCATTAGGAGCTTGCTTATGTAG
AA sequence Show only first row Show all	>Lus10037198 pacid=23152613 polypeptide=Lus10037198 locus=Lus10037198.g ID=Lus10037198.BGIv1.0 annot-version=v1.0 MSSRRSSSSRSRQSSRSIISDDQIIDLISKLQRLIPEARSSSRRSRDKGSASKVLQETCNYIKDLHREVDDLSDRLSELLATTDSDSAQAAIIRSLLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	0	1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	1.7	0.9463
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	2.0	0.9650
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	2.8	0.9567
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	3.5	0.9329
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	5.3	0.9440
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	5.7	0.8869
AT3G59090			unknown protein		Lus10004930 [exp]	6.5	0.9073
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	7.1	0.9037
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	13.7	0.9125
					Lus10016618 [exp]	16.2	0.8252

Compare expression of checked genes

Lus10037198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.