Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69780 295 / 3e-100 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G26960 256 / 4e-85 HD ATHB23 homeobox protein 23 (.1) AT3G01220 207 / 1e-65 HD ATHB20 homeobox protein 20 (.1) AT5G15150 206 / 1e-64 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G65310 144 / 6e-41 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 140 / 8e-40 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 137 / 4e-38 HD ATHB6 homeobox protein 6 (.1) AT3G01470 132 / 8e-37 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G27045 108 / 3e-28 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT2G46680 107 / 2e-27 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036730 [exp] 525 / 0 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 327 / 5e-113 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10012845 [exp] 323 / 2e-111 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10023159 [exp] 133 / 1e-36 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10022225 [exp] 131 / 3e-36 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 132 / 4e-36 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 130 / 1e-35 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 129 / 4e-35 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 127 / 2e-34 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148200 [exp] 382 / 4e-134 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 358 / 8e-125 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.017G081700 [exp] 253 / 2e-83 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.015G065400 [exp] 144 / 7e-41 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 140 / 4e-40 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.012G070900 [exp] 139 / 6e-39 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.007G097100 [exp] 137 / 6e-38 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 136 / 1e-37 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.005G161500 [exp] 131 / 2e-36 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.008G194400 [exp] 124 / 1e-33 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10037200 pacid=23152581 polypeptide=Lus10037200 locus=Lus10037200.g ID=Lus10037200.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCCAAACAAACTTCATGCTCCAATCCTCTCATGAAGACGATCACAATCATCACCAACAACCTCCCGCTTCTCTCAATCCAATTCTCCCTT CCTGCACGCCACAGGACTTCCATGGGGTGGCATCATTCCTAGGGAAGAGATCAATGTCCTGTTCAGGTATTGATGCATGCCATGAAGAAGGGAATGGAGA GGATGAGCTATCAGATGATGGGTCACTAGCTGGAGAGAAAAAGAGGAGGCTAAACATGGAACAAGTGAAGACACTTGAGAAAAACTTCGAATTGGGGAAC AAGCTTGAACCAGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGACTTCAACCAAGGCAAGTTGCGATTTGGTTTCAAAACAGGAGAGCCAGATGGAAGA CAAAACAGCTTGAGAAAGACTATGATCTCCTCAAGAGACAGTATGAAGCTGTAAAAGCTGATAACGACTCACTCCAATCCCAGAACCAAAAGCTTCATGC TGAGCTAGTGGCACTGAAAAGCAGGGGACCAGCGCATGAATCAATCAACCTGAACAAAGAAACTGAAGGGTCTTGCAGCAACAGAAGTGAGAGCAGTTCT GAAAACAAGCTAGATACCCCACCCCCAGCACCAGCCGCCATTGACAGCCATCCAACAAGCAGTGGGAGACCCTTTTTCCCCACAACTTCACAGCTTTTCC ACAACAACAATAATAACAACTCTCCATCGTTAAGGTCACCAATAGGATCTGATCATCACCATCATCATCAGAATCCCAACATCCACAAGAGTATCGATCA GATTGTGAAGGAAGAAAACCTCACCACCATGTTCTGTAGCATTGATGACCAGTCTGGGTTTTGGCCTTGGCTTGAGCACCAGCAGTTCAATTGA
AA sequence Show only first row Show all	>Lus10037200 pacid=23152581 polypeptide=Lus10037200 locus=Lus10037200.g ID=Lus10037200.BGIv1.0 annot-version=v1.0 MAFFQTNFMLQSSHEDDHNHHQQPPASLNPILPSCTPQDFHGVASFLGKRSMSCSGIDACHEEGNGEDELSDDGSLAGEKKRRLNMEQVKTLEKNFELGN KLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADNDSLQSQNQKLHAELVALKSRGPAHESINLNKETEGSCSNRSESSS ENKLDTPPPAPAAIDSHPTSSGRPFFPTTSQLFHNNNNNNSPSLRSPIGSDHHHHHQNPNIHKSIDQIVKEENLTTMFCSIDDQSGFWPWLEHQQFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	4.9	0.8516
AT1G15410			aspartate-glutamate racemase f...		Lus10014492 [exp]	10.2	0.8290
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	10.9	0.8881
AT1G06930			unknown protein		Lus10009096 [exp]	12.6	0.8693
AT3G17120			unknown protein		Lus10037790 [exp]	15.0	0.8605
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	15.2	0.8903
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	18.3	0.8073
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	18.7	0.8446
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	19.4	0.8079
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020830 [exp]	24.1	0.8067

Compare expression of checked genes

Lus10037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.