Plant FIBer expression Database

Lus10037201 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14345 190 / 2e-61 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036729
[exp]
101 / 2e-27 AT1G14345 100 / 4e-27 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G093300
[exp]
192 / 2e-62 AT1G14345 194 / 3e-63 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10037201 pacid=23152379 polypeptide=Lus10037201 locus=Lus10037201.g ID=Lus10037201.BGIv1.0 annot-version=v1.0
ATGGCTTCCATCCATTTCCTCTCACCGCCGACGACCACAACCTCCTCCACCGCCGCAAGAATCACCACCACAACTCCAAAAATCCCCTTCCTTCCCCGCC
AGATTTCGACCACCACAAGGATCAACGTCTCATCACCAGCCAACAACAAATCCCCAACCAGCACATCCACAAAACCCTCGAAATCCTCCTCCTCCCAGAG
GAAGCCTCCGCCGACGGAGGAAGTGATCTACTTCGACGGCGGCGCCCACTACGGCGACCTGGCGGCGAATTTGCTGCTCGGATTCACACTCTTCTGGCTT
CCCCTGACGCTCGCGGCAGTGTCCAGGGCGTTCAACCTCAGGTACCGGTTCACCAACCTCCGGGTGACGGTGATCTCCGGGCTGACGGGGCAGGAGCGGA
GCGATTTCTCATACAAGGTGATTAAGGACGTGCAGGTGGTGCCGAGGTTCATCGGGGAGTGGGGGGACGTGATCATCACGCTCCGGGATGGGACTAAAGT
TGATCTTAGAAGCGTGCCCAAGTTTCGGGAGATTGCCAGTTACTGCCGGTCTATGATCGAGGAGCCAGCCGCTGCAGCGTCTGCGGCGGGGGACGGCCGG
GGTCGCTGCGACGGAGAATCGCCGGGCTAA
AA sequence
>Lus10037201 pacid=23152379 polypeptide=Lus10037201 locus=Lus10037201.g ID=Lus10037201.BGIv1.0 annot-version=v1.0
MASIHFLSPPTTTTSSTAARITTTTPKIPFLPRQISTTTRINVSSPANNKSPTSTSTKPSKSSSSQRKPPPTEEVIYFDGGAHYGDLAANLLLGFTLFWL
PLTLAAVSRAFNLRYRFTNLRVTVISGLTGQERSDFSYKVIKDVQVVPRFIGEWGDVIITLRDGTKVDLRSVPKFREIASYCRSMIEEPAAAASAAGDGR
GRCDGESPG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G14345 NAD(P)-linked oxidoreductase s... Lus10037201
[exp]
0 1
AT4G32260 PDE334 PIGMENT DEFECTIVE 334, ATPase,... Lus10041039
[exp]
1.4 0.9634
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Lus10009352
[exp]
2.0 0.9596
AT2G33855 unknown protein Lus10013983
[exp]
2.4 0.9588
AT1G29700 Metallo-hydrolase/oxidoreducta... Lus10035042
[exp]
2.8 0.9452
AT4G24930 thylakoid lumenal 17.9 kDa pro... Lus10007492
[exp]
3.6 0.9309
AT1G17100 SOUL heme-binding family prote... Lus10012559
[exp]
4.6 0.9407
AT5G23060 CaS calcium sensing receptor (.1) Lus10000867
[exp]
5.5 0.9334
AT5G57345 unknown protein Lus10001438
[exp]
5.5 0.9415
AT1G64890 Major facilitator superfamily ... Lus10024977
[exp]
5.6 0.9097
AT1G17100 SOUL heme-binding family prote... Lus10041532
[exp]
7.9 0.9199

Lus10037201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.