Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41760 529 / 0 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 224 / 4e-71 Nucleotide-sugar transporter family protein (.1) AT3G59360 153 / 5e-43 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT2G43240 152 / 7e-43 Nucleotide-sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036726 [exp] 602 / 0 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026562 [exp] 238 / 7e-76 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 202 / 2e-61 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025486 [exp] 154 / 2e-43 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10027009 [exp] 155 / 8e-42 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094600 [exp] 543 / 0 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.003G136800 [exp] 541 / 0 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 236 / 1e-75 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G077300 [exp] 159 / 2e-45 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.017G035800 [exp] 156 / 4e-44 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 152 / 9e-43 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10037204 pacid=23152435 polypeptide=Lus10037204 locus=Lus10037204.g ID=Lus10037204.BGIv1.0 annot-version=v1.0 ATGAAATGGTACTTTGTAGCCGTCCTTCTGACCGTCCTCACTAGCTCTCAGGGAATTTTGACTACCCTGTCTCAAACTAAAGGAAGGTATCTGTATGACT ATGCAACGGTGCCCTTTCTTGCCGAATTATACAAGCTAGTGGTTTCTGCTTCACTTCTGTGGCGTGAATCCCGGACATCACAATCGATGAGAATAACCAC GGAATGGAAGACTGTGCGGCTGTATCCCATTCCATCCATCATATACCTGATTCACAATAATGTTCAGTTTGCTACACTGACTTACGTGGACACCTCAACG TACCAGATCATGGGAAATTTGAAGATTGTCACCACTGGAATACTATTCAGGTTGTTCCTTAAGAGGAAGCTGTCTAATCTTCAATGGATGGCAATTGTTC TGTTAGCTGTTGGAACAACCACTAGCCAGGTTAAGGGCTGTGGAGAAGGGTCCTGCGAATCTCTGTTTTCAGCTCCAATTCAGGGTTACATGCTGGGCGT TCTGTCTGCTTGCCTCTCAGCATTAGCTGGGGTTTACACAGAGTTTCTGATGAAGAAGAACAACGATAGCTTGTACTGGCAGAATGTACAGTTGTATACG TTTGGGGTAATTTTCAATATGGCAAAGCTTATAGTAGATGATTTCCAAAGCGGATATGAAAAAGGACCCTGGTGGCAGCGTCTCTTCAACGGATATAGTA TAACCACTTGGCTGGTTGTTTTGAATCTTGGTTCCACTGGTTTACTGGTTTCATGGTTGATGAAGTATGCTGATAATATAGTGAAGGTCTATTCGACATC AATGGCGATGCTACTGACAATGGTTCTGTCGGTATTCCTATTTTCGTTTAAGCCCACACTCCAGCTCTTCTTGGGTATCATCATATGTATGATGTCACTT CACATGTATTTTTCCCCTCCGAACAAGCTTGTGGATTTGCCTGCACCCGTCAAACCTGTTCCTGAAGTTCTGAAAGAAGTTTCTATTGACCGAAGGACCG AATCCTGA
AA sequence Show only first row Show all	>Lus10037204 pacid=23152435 polypeptide=Lus10037204 locus=Lus10037204.g ID=Lus10037204.BGIv1.0 annot-version=v1.0 MKWYFVAVLLTVLTSSQGILTTLSQTKGRYLYDYATVPFLAELYKLVVSASLLWRESRTSQSMRITTEWKTVRLYPIPSIIYLIHNNVQFATLTYVDTST YQIMGNLKIVTTGILFRLFLKRKLSNLQWMAIVLLAVGTTTSQVKGCGEGSCESLFSAPIQGYMLGVLSACLSALAGVYTEFLMKKNNDSLYWQNVQLYT FGVIFNMAKLIVDDFQSGYEKGPWWQRLFNGYSITTWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVLSVFLFSFKPTLQLFLGIIICMMSL HMYFSPPNKLVDLPAPVKPVPEVLKEVSIDRRTES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	0	1
AT5G49100			unknown protein		Lus10037496 [exp]	5.5	0.9070
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	6.2	0.9272
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	9.4	0.9165
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	11.2	0.9156
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Lus10021754 [exp]	12.1	0.9172
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	17.5	0.9222
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	19.4	0.9007
AT2G28720			Histone superfamily protein (....		Lus10028826 [exp]	20.1	0.8928
AT5G54970			unknown protein		Lus10032643 [exp]	21.8	0.9138
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	25.6	0.9106

Compare expression of checked genes

Lus10037204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.