Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15130 174 / 4e-48 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G68150 153 / 7e-42 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 154 / 1e-41 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT4G04450 147 / 2e-38 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G62300 145 / 7e-38 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G01720 142 / 5e-37 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT4G22070 141 / 2e-36 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G69810 138 / 2e-36 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT1G80840 103 / 2e-24 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 101 / 1e-23 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036725 [exp] 551 / 0 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10023615 [exp] 161 / 2e-43 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 161 / 2e-42 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10015546 [exp] 146 / 2e-39 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10035286 [exp] 147 / 2e-38 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10021554 [exp] 145 / 8e-38 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10016682 [exp] 143 / 2e-37 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10035971 [exp] 142 / 2e-37 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10022959 [exp] 144 / 3e-37 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064100 [exp] 218 / 6e-64 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.017G079500 [exp] 201 / 3e-58 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 154 / 4e-41 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.014G111900 [exp] 147 / 1e-38 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.004G007500 [exp] 146 / 6e-38 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.011G007800 [exp] 146 / 7e-38 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G155100 [exp] 144 / 3e-37 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G186600 [exp] 142 / 6e-37 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.002G228400 [exp] 141 / 4e-36 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.001G044500 [exp] 107 / 1e-25 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10037205 pacid=23152366 polypeptide=Lus10037205 locus=Lus10037205.g ID=Lus10037205.BGIv1.0 annot-version=v1.0 ATGATCAGATCGGCGGAAGCGGAGATGGGGAGCGTGAAGGAAGAGAACGAAAGGCTAAAGCAGCTCCTCTCCAAATTGGTCAACGACTACCACTCTCTCC GTACGCATTTCCTTAAAATCCGCAGCGATGATCGTACGGTAAAACCTGATCCGGCGGCGGCGGAGGAGGAGGAAGAATCCGACGAGCAACTCTTCTCCCT CAGCCTTGGGAGAACTAGTAGGGAATTACCAAAGAAGATTGTTCAGGTGGAGCCCACCACGACCAAGAAGAGGAAACTTGCTGAGGGAGGGCTGTCGCTT GGGTTGGTTGACTATTCTGAAGTGGCGGCAGCGGCGGCGGACAATAATAATAGTAATAGCGGCTCCGAGGAGGAGGAAGAAGCGGCGGTGGTTGTGGCGG AGGCGTGGCCGCCGAGCAAAGTTCTGAAGACCATGAGGAATAATAGTAACAATAATAATACTAATAGTAGTAGTAGCTCGGATGATCGGGAGGATCAATT GCAACAACCATTACTGCAGCCTCAGTTGAAGAAAGTTAGGGTTTCCATTCGAGCCCGAGTCGACACTCCTACCATGAAGGATGGATGTCAATGGAGGAAA TATGGACAGAAAATAGCAAAGGGAAACCCATGCCCACGAGCCTACTACCGCTGCACTCTCTCCCCAACTTGCCCTGTGAGAAAACAGGTTCAAAGGTGTG TGGACGACATGACGGTCTTGATAACAACATACGAAGGAGCACACAACCATCCTCTTCCCTACTCGGCCACCGCCATGGCTTCCACCACAGCAGCAGCTGC ATCGATGCTCCAATCTTGCTCTTCGTCTTCCTCACTCCCGCTCTCCACCATCTCAGCTCCTTCCCAAACCACCACCACACCACAAAACCCTAACCATCAC TTCTACTTCCCAAACTCCTCCATCTCGACATGCAACTCGCACCCGACCATCACCCTCGACCTCACCACACCCTCAGCCTCTGTTTCCCTCGCAGCCATGA ACGCTCGCTCCTCCATACCTCCACCGTCCACATACTCCTCTGCCTCAAACACTCTCGACTTCTCCAGGTCAACTTCCACGATGATGCCTTGTAACGCTAG TAACCTAATGATGGGTTACTTGTTACCCAAGCAACCGCTACCGCAGCCACATTTAGGTCAGCAAGGTGATTATTTATATGGTCGTCGTCATCACCAACAT GTCGACGATGGGAGGTTGTTGATGACAGGTGGATCGTCGTCAGCAGACATGAGCATCGCTGCAGCAGCGGCCACCAAGGTGATTACTTCCAACCCAAGTT TCAGGTCTGCTTTGGCGGCGGCAATCACGTCGTTCGTTGCGAAGGCCGATCATCAAGGGGAGCAGCTTCAAACGTCGTCGTTTACATTGTTTCAAGGGAG CAATAACAAAAAGGAGAGTGATTTAAGTTAA
AA sequence Show only first row Show all	>Lus10037205 pacid=23152366 polypeptide=Lus10037205 locus=Lus10037205.g ID=Lus10037205.BGIv1.0 annot-version=v1.0 MIRSAEAEMGSVKEENERLKQLLSKLVNDYHSLRTHFLKIRSDDRTVKPDPAAAEEEEESDEQLFSLSLGRTSRELPKKIVQVEPTTTKKRKLAEGGLSL GLVDYSEVAAAAADNNNSNSGSEEEEEAAVVVAEAWPPSKVLKTMRNNSNNNNTNSSSSSDDREDQLQQPLLQPQLKKVRVSIRARVDTPTMKDGCQWRK YGQKIAKGNPCPRAYYRCTLSPTCPVRKQVQRCVDDMTVLITTYEGAHNHPLPYSATAMASTTAAAASMLQSCSSSSSLPLSTISAPSQTTTTPQNPNHH FYFPNSSISTCNSHPTITLDLTTPSASVSLAAMNARSSIPPPSTYSSASNTLDFSRSTSTMMPCNASNLMMGYLLPKQPLPQPHLGQQGDYLYGRRHHQH VDDGRLLMTGGSSSADMSIAAAAATKVITSNPSFRSALAAAITSFVAKADHQGEQLQTSSFTLFQGSNNKKESDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	0	1
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	1.4	0.9857
					Lus10002555 [exp]	2.0	0.9846
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	2.2	0.9883
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	5.0	0.9825
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	7.3	0.9850
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	8.1	0.9711
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	8.8	0.9814
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	9.2	0.9813
					Lus10018894 [exp]	10.0	0.9725
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	11.2	0.9768

Compare expression of checked genes

Lus10037205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.