Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14410 226 / 2e-72 WHY1, ATWHY1, PTAC1 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) AT2G02740 216 / 3e-68 WHY3, ATWHY3, PTAC11 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) AT1G71260 114 / 2e-29 WHY2, ATWHY2 WHIRLY 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036723 [exp] 259 / 2e-85 AT1G14410 342 / 1e-119 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) Lus10017892 [exp] 113 / 6e-29 AT1G71260 271 / 3e-92 WHIRLY 2 (.1) Lus10035067 [exp] 109 / 3e-27 AT1G71260 270 / 1e-91 WHIRLY 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149100 [exp] 228 / 8e-73 AT2G02740 321 / 4e-111 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.010G092500 [exp] 114 / 2e-29 AT2G02740 208 / 1e-66 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.003G048700 [exp] 112 / 6e-29 AT1G71260 283 / 5e-97 WHIRLY 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF08536 [flax] [poplar] Whirly Whirly transcription factor
Representative CDS sequence Show only first row Show all	>Lus10037206 pacid=23152550 polypeptide=Lus10037206 locus=Lus10037206.g ID=Lus10037206.BGIv1.0 annot-version=v1.0 ATGTTGCAGCTGAACTCGTTGTCTTCTTCTTCTTCTTCTTCTTCTCTGTTGAGAACCCAAAACCCTAAAGTATGCTCTCAGCATTCTCTTGCGTCTGTGG AGTTTAACCATGGAGCGTTTCGGGTTCCGACAAAACGACGGTGTGACGTTTCGTTCTCCAGAACCGCCGGAACGAGGAGCAGGAATCTCGCCGTGAAGTG CCGGCAGTCGTCGTACTTTGAACAGCAGAATTTCAGCAACAGCTCAGGGAATAGCTCTTCATCTTCGCGGGGTCAAGGAGCTTCTAATGGTGGAGAATTG CCGGCTAGGGTTTATGTGGGGCATTCAATATACAAAGGGAAGGCTGCTCTTACCGTGGAGCCTAAATCACCTGAGTTCACGCCGCTAGAATCTGGAGCGT TCAAGCTTGTCAGGGAAGGGTTTGTCTTCTTACAATTTGCTCCAGCATCTGGTCTTCGACAATACGACTGGAGCCGGAAGCAGGTAATTTATGGAAGTTG GTGCCCAAAGTTGTTATCTTTAGCTAGAAGATCAGATCTTTATACAACCTTGATGCTCCTGGGAATCGATTTTGATTCTGATATGTGTAAGCTCTTTCTA CGCGATTTTAAGCATTTCGATGCAAAGCCCTGGTCAAACTTCGAAGTTCTTACCCTTGTTGGAGAGAAACTCTGTTCTTATTGTTGCTTCATGAGTATGT ATGGGTCTTACATTAACATAACGACGGTTGATTTCACTTACCTGCAGATGTTTTCTTTGTCGGTTACTGAAATCGGAACTCTAGTAAGCCTTGGCACAAA GGAATCCTGCGAGTTTTTTCACGATCCTAATAAAGGGAAAAGTGATGAAGGTAAGATCAGGAAGGTATTGAAGGTAGAGCCGCTCCCAGATGGCTCAGGC CACTTCTTTAATCTAAGTGTCCAGAACAAACCCTTGAACTTGGACGAGAGCATCTACATTCCTGTAACAAGGGCAGAGTTCACTGTGCTTGTCTCAGCTT TTAACTACCTCTTGCCATACTTAATAGGATGGCACGCATACGCGAACTCAATAACCCCCGGTGAATCGACCAAACCGAATAATGCCAGCGCGAGATATGG ATCAGACTATGAATGGAGCAGGTGA
AA sequence Show only first row Show all	>Lus10037206 pacid=23152550 polypeptide=Lus10037206 locus=Lus10037206.g ID=Lus10037206.BGIv1.0 annot-version=v1.0 MLQLNSLSSSSSSSSLLRTQNPKVCSQHSLASVEFNHGAFRVPTKRRCDVSFSRTAGTRSRNLAVKCRQSSYFEQQNFSNSSGNSSSSSRGQGASNGGEL PARVYVGHSIYKGKAALTVEPKSPEFTPLESGAFKLVREGFVFLQFAPASGLRQYDWSRKQVIYGSWCPKLLSLARRSDLYTTLMLLGIDFDSDMCKLFL RDFKHFDAKPWSNFEVLTLVGEKLCSYCCFMSMYGSYINITTVDFTYLQMFSLSVTEIGTLVSLGTKESCEFFHDPNKGKSDEGKIRKVLKVEPLPDGSG HFFNLSVQNKPLNLDESIYIPVTRAEFTVLVSAFNYLLPYLIGWHAYANSITPGESTKPNNASARYGSDYEWSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	0	1
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	2.0	0.9213
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	3.5	0.8927
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	4.2	0.9278
AT5G41270			unknown protein		Lus10035306 [exp]	4.4	0.8797
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	4.9	0.9003
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	4.9	0.9007
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	4.9	0.9167
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	6.7	0.9012
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	8.4	0.8872
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10021371 [exp]	9.4	0.8374

Compare expression of checked genes

Lus10037206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.