Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14420 516 / 0 AT59 Pectate lyase family protein (.1) AT3G01270 514 / 0 Pectate lyase family protein (.1) AT5G15110 509 / 2e-179 Pectate lyase family protein (.1) AT2G02720 485 / 4e-170 Pectate lyase family protein (.1) AT4G13710 447 / 4e-155 Pectin lyase-like superfamily protein (.1.2) AT3G07010 430 / 4e-149 Pectin lyase-like superfamily protein (.1) AT1G67750 425 / 3e-147 Pectate lyase family protein (.1) AT3G24230 423 / 8e-146 Pectate lyase family protein (.1) AT3G24670 421 / 5e-145 Pectin lyase-like superfamily protein (.1) AT1G04680 417 / 8e-144 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036721 [exp] 809 / 0 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 636 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 506 / 1e-178 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 490 / 8e-172 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 472 / 3e-164 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 466 / 2e-162 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10038157 [exp] 431 / 9e-149 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 428 / 7e-148 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 427 / 1e-147 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148800 [exp] 593 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 552 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.017G078400 [exp] 499 / 1e-175 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 484 / 2e-169 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 438 / 9e-152 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 436 / 4e-151 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 423 / 2e-146 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 422 / 4e-146 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 420 / 1e-144 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G238800 [exp] 417 / 9e-144 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10037207 pacid=23152592 polypeptide=Lus10037207 locus=Lus10037207.g ID=Lus10037207.BGIv1.0 annot-version=v1.0 ATGGATTCCGTATGCATCAGGTTGAATTTGGTCGTTCTAGTTGTGGTTTCGACTTTGGTTCATGATATTGGCGCCCACATTGCGGATTTTGATGAGTATT GGCAGCAACGAGCCGAGGAGGCGAGACGGGCCGCCCTAGAGACCTACCACCCGGAGCCGTACAATGTCACGGAGCATTTCAATGCAATGGTCCAGATGGA TCTGTTCGGGTCGAATACCACCCGGCGGAGCATGAAGAAGAACTGGGGTCCGTGTATGGCTACCAATCCTATTGACAGGTGCTGGCGGTGCGACCCGAAC TGGGCCAAAAACCGCCAGAAGCTGGCGGACTGTGTGCAGGGTTTTGGGTATAGGACGAGAGGTGGGAAGGGAGGGCCGATCTATGTGGTCACTGACGGCT CAGACATCGATCTGGTCAACCCGAAACCCGGGACGCTCCGACATGCAGTGATCCAAAAAGGTCCCCTCTGGATCATCTTCGGACGGAGCATGGTCATAAG ATTATGCCAGGAGCTCATGGTCACGAGCGATAAGACCATCGATGCGAGAGGAGCCAACGTCCACATAACTAAAGGAGCCGGGATCACACTTCAGTACGTA AAGAACGTGATCATCCACGGGCTCCACATTCACGACATTGTCCCTGGTTCGGGTGGACTGATCCGGGACTCCGTGGATCACTATGGCTTCAGGTCTAGGA GCGATGGTGACGGGATCTCGCTCTACGGGGCATCTAACATCTGGATCGACCACGTGTCCATGTCGAACTGCGGTGATGGGGTCATCGATGCCATCATGGG CACCACCGGCGTCACCATCTCTAACTCTCATTTCACCGATCATAACGAGGTGTTGTTGTTCGGAGCAAGCGCGAGCCACTCGAACGACACGATCATGCAG ATCACGATTGCGTTCACCCATTTCGGAAAGGGTCTGGTCCAGAGGATGCCAAGGTGTAGATGGGGATTCTTCCACGTGGTCAACAACGACTACACTCACT GGCTAATGTACGCCATCGGAGGTAGCAACAAGCCTACCATCATCAGCCAGGGCAACCGATTCATCGCTCCTGAGAACCATAATGCCAAACAAGTGACGAA GAGGGAATACGCATCGGAAGGAGACTGGAAGTCGTGGGATTGGGTAACAGAAGGAGATCTGTTGATGAACGGAGCATATTTCATCCCGTCGGGGAATCCA AGGGTTGCCAGCAAATATTCGAGTAGACAACTGATCAAACAGAAACCTGGAACATTTGTTACCAGGATGGTTCGTTATGCTGGTACACTTGAATGCCGCG TTGGAAAGCCATGCTGA
AA sequence Show only first row Show all	>Lus10037207 pacid=23152592 polypeptide=Lus10037207 locus=Lus10037207.g ID=Lus10037207.BGIv1.0 annot-version=v1.0 MDSVCIRLNLVVLVVVSTLVHDIGAHIADFDEYWQQRAEEARRAALETYHPEPYNVTEHFNAMVQMDLFGSNTTRRSMKKNWGPCMATNPIDRCWRCDPN WAKNRQKLADCVQGFGYRTRGGKGGPIYVVTDGSDIDLVNPKPGTLRHAVIQKGPLWIIFGRSMVIRLCQELMVTSDKTIDARGANVHITKGAGITLQYV KNVIIHGLHIHDIVPGSGGLIRDSVDHYGFRSRSDGDGISLYGASNIWIDHVSMSNCGDGVIDAIMGTTGVTISNSHFTDHNEVLLFGASASHSNDTIMQ ITIAFTHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNKPTIISQGNRFIAPENHNAKQVTKREYASEGDWKSWDWVTEGDLLMNGAYFIPSGNP RVASKYSSRQLIKQKPGTFVTRMVRYAGTLECRVGKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	2.0	0.8500
AT1G13570			F-box/RNI-like superfamily pro...		Lus10003016 [exp]	2.2	0.8097
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	4.0	0.8118
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	10.0	0.8322
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	10.8	0.7491
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	12.0	0.8055
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	14.7	0.7425
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	15.5	0.8137
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	19.6	0.7876
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	19.8	0.7497

Compare expression of checked genes

Lus10037207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.