Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27000 236 / 1e-75 Protein of unknown function (DUF1664) (.1) AT2G02730 206 / 4e-64 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G04960 162 / 1e-46 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 82 / 4e-17 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 61 / 6e-10 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G44674 48 / 1e-07 Protein of unknown function (DUF1664) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036718 [exp] 561 / 0 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10013269 [exp] 363 / 2e-125 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10030793 [exp] 323 / 9e-101 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10014626 [exp] 157 / 1e-44 AT1G04960 318 / 3e-108 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10033807 [exp] 127 / 3e-34 AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10011347 [exp] 92 / 2e-20 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10003127 [exp] 85 / 2e-18 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092700 [exp] 331 / 1e-112 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.008G149000 [exp] 323 / 1e-109 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.014G160800 [exp] 160 / 5e-46 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.002G219300 [exp] 160 / 6e-46 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 99 / 8e-23 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.003G169200 [exp] 92 / 9e-21 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10037210 pacid=23152584 polypeptide=Lus10037210 locus=Lus10037210.g ID=Lus10037210.BGIv1.0 annot-version=v1.0 ATGGCTATGCAAGCTGCGTTCAGCTCCAGGATCCTGTTAATCGCCGGAGCAGGTACTCTCCACCGCTCGATCACCGGATATTCTTGCTGCGATTTCGTGT TTCTTCACTCGCTCCAGCATCGTCGGTCTTTACGTGCTATGATTCTGATTTTTGACCAAGTTTTGTGTCGGTTTTTGACAAGTTTTGTATCGGCTGCAGG TTATGCAGGGACGATATTGGTCCAGAAAGGTAAATTGTCCGATCTGATCGGCGAACTTCAGGTAACCTCGAGTTGCTCAGCCTCGCCGTTTATGGCAATC GTGAAAGGAATAGAGAAGGGGGACACGGATGGCGATTCAGGTCATGCCGATGCTATTGCACAGCAGGTGCGTAGATTGGCTCAGGAGGTTCGACAGCTTG CTTCATCGAGGCAAATTACTGTTCTGAATGGAAATGGGGGATCAGGTAATTTAACCAGTCTTATAGTGCCGGCTGCTGCACTGGGAGCTGTAGGCTATGG TTACATGTGGTGGAAAGGTCTGAAACTTTCAGATCTTATGTATGTAACAAAGCGAAATATGACAGCTGCTGTTTCAAACTTAACAAAGCACTTGGAAGAT GTTTCTGGGGCTCTAGCAAAAGCAAAAGAACATTTAACACAAAGGATTCAGGGTTTAGACGATAAGATGGACGCTCAGAAGGAAATCTCCAAAGCAATTC AAAATGATGTTACTACTATTAACGAGAACATTCAGCTGCTTGACTCTGACCTGTTTGAGTTGCAACGCATTGTCTCTGGATTGATGGCTGTTTCATCACT TCCTTTTATGTTGCAGGACGGCAAGATAGGCTCATTGGAAAACAAGCAGGATCTAGCTAATATGGGTATTGCTTTCCTGTGCAACTTCGCTCACGGAAAG AAAGTAACAATGCCTAAAGTCCTGGAGGATCAGCTTACTGGTCCAGGGAGAACTCGCAGTTCACTTACATTCCATCAAGCTTCAGATGGCATGGGTCTGA AGGCGCTGACAGACAATTTAGCTCGTAGTGCAAGTGTTCCAGTGAATGATATCAATGGAGAAGAGCCACAGATGCCAGCTGCTGAACGACACGTACCTTT ATTGAGGCTTAGTTCGGCCAAGTGTTGA
AA sequence Show only first row Show all	>Lus10037210 pacid=23152584 polypeptide=Lus10037210 locus=Lus10037210.g ID=Lus10037210.BGIv1.0 annot-version=v1.0 MAMQAAFSSRILLIAGAGTLHRSITGYSCCDFVFLHSLQHRRSLRAMILIFDQVLCRFLTSFVSAAGYAGTILVQKGKLSDLIGELQVTSSCSASPFMAI VKGIEKGDTDGDSGHADAIAQQVRRLAQEVRQLASSRQITVLNGNGGSGNLTSLIVPAAALGAVGYGYMWWKGLKLSDLMYVTKRNMTAAVSNLTKHLED VSGALAKAKEHLTQRIQGLDDKMDAQKEISKAIQNDVTTINENIQLLDSDLFELQRIVSGLMAVSSLPFMLQDGKIGSLENKQDLANMGIAFLCNFAHGK KVTMPKVLEDQLTGPGRTRSSLTFHQASDGMGLKALTDNLARSASVPVNDINGEEPQMPAAERHVPLLRLSSAKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	0	1
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	2.0	0.8759
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	5.7	0.8702
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	7.5	0.8475
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	8.9	0.8640
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10001250 [exp]	9.2	0.8221
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	9.5	0.8671
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	15.0	0.8118
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	16.7	0.8541
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	17.3	0.8171
AT5G04000			unknown protein		Lus10042034 [exp]	18.8	0.8057

Compare expression of checked genes

Lus10037210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.