Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69830 1117 / 0 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 404 / 7e-133 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT4G25000 349 / 1e-111 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036717 [exp] 1697 / 0 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 1363 / 0 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10013270 [exp] 1352 / 0 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 409 / 2e-134 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10042655 [exp] 363 / 1e-116 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 363 / 1e-116 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10013044 [exp] 45 / 0.0003 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10029118 [exp] 45 / 0.0003 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092900 [exp] 1216 / 0 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.017G093200 [exp] 508 / 1e-165 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 412 / 2e-135 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.014G029400 [exp] 394 / 1e-128 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 382 / 2e-124 AT4G25000 591 / 0.0 alpha-amylase-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF07821 [flax] [poplar] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10037211 pacid=23152492 polypeptide=Lus10037211 locus=Lus10037211.g ID=Lus10037211.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGGTCACCGTCGAGCCGCTCCTCCGATGTCACCGCCGGATGGAGGCTTCCGGTTTCCGGAAGCTCGCCTGCTCTTCCACCTCTTCTTCTG CGTTGAATTGTCCGCGGCAGAAGCAGTTTTTCCGCGGCGCCAGTTTCAGGAAATGCAAGCTTCTAAGGGGTAGTGTCGTGATCAAAGCTAGCAGCACCGA TACAGTTGTTGCCGACACCACTGATGAATCGCCAGTCGATGCGTTCTTCCGGGAGAGCTTTCCCGTCACTCGAACTGAAACGGTTGAAGGAAAGATGTTT GTTCGCGTAGATCAGGAGAATGGGGAAGGTAATTGGCAGCTTACTGTAGGATGTACCATACCTGGGAACTGGATTCTTCATTGGGGAGTCACTTACGTCG ATGATCTTGGCAGCGAATGGGATCAACCTCCAGAACATATGAAACCATATGGTTCAGTACCAGTGAAGGATTATGCTGTAGAGACACCTTTACAGAAAGC ATCTAAAGATGATCCGTTCTATGAATTAAAGATTGACATTGATCCCAATTGTGCAATTTCTGCAATAAATTTTGTCCTCAAGGATGAAGAAACTGGAACC TGGTATCAGTATGAGGGCAGAGATTTTAAGGTGGTTCTTGGGGATAACCGCCTCGAAGGCGGCAATGGAACAAGCAGCTCGAATTTTCCAGGGCCTTTCC TTTACAACCCATTGCTCAAAGCAACAACAGAAGATGGCATCGGTGAGCACAATGATGATAAAGGGGAGGATCAAAAGTTAGAAGGGTTCTATGAAGAGCA GACCATTACGAAACATAAAGCTATTGAAAATTCAGTGTCCGTTTTAGTTAGAAGGTGCCCTGAGACATTCAGGAATCTTGTTCATCTTGAAACCGATCTA CCTGCAGCTGTTGTTCACTGGGGAGTATGCAGAGATGACGAGAAAAATTGGGAAATCCCACCTGGCCCTCATCCACCAGAAACGATCATATTCAAGGAAA AAGCCTTGCGCACTTCTTTGCAGTCTAAGGAGGATGGGGGTGGATGTTCAGGGTTGTTTACCTTGGATGAAGATCTTGCTGGTTTTCTTTTTGTTCTCAA GCTAAATGATAGCACTTGGTTGAAATGCATGGGAAACGACTTTTGCATCCCTCTCTCAAGTTCAAGCAGCTCGCTTTCTCAACCTGGACAGGAACAATCT AAAGATGCACCAGCCTCCGAAAGGGGAGTAGGTGCAAATCAAGGTTCTGGTACTGCTTTTACTGATGAGATAATTAAAGAAATAAGGCACTTGGTGAGTG GAATCTCTGCCGAGAGCAGCCAGAAGGTGAAAACGAAAGAAGCACAAGAGAGCATTCTTCAGGAGATTGAGAAGTTGGCTGCTGAAGCCTACAGTATCTT CCGAAGCTCTACACCGACTTTCAAAGAAGAAGCTGTTTTGGAAGAAGAACTGAAGAAAAAACCCCCTCCGCTAAAGTTCTCTGGTACAGGCAGTGGATAT GAAATTTTGCTTCAAGGATTCAATTGGGAATCTCATAAATCTGGAAGATGGTATATGGAGTTTAAAGAGAAGGCCAAAGATATAGCTTCACTTGGGTTCA CTGTAGTATGGTTGCCTCCACCTACAGATTCTGTGTCACCTGAAGGATACATGCCGAGGGATCTGTATAATTTGAACTCCAGATATGGAAATATTGATGA GCTAAAGGATCTTGTGCGAACACTTCATAAATCAGGCATTAAAGTTCTTGGAGATGCTGTCCTGAACCACCGATGTGCACAGTACCAAAACCAGAATGGA ATTTGGAACATGTTTGGTGGTCGCTTAAATTGGGATGACCGAGCTGTCGTTGCTGATGATCCACATTTCCAGGGTAGAGGAAACAAGAGCAGTGGGGACA ACTTTCATGCTGCCCCAAACATCGATCATTCGCAGGATTTCGTGAGGAAAGATTTGAAAGAATGGATGTGCTGGCTAAGAAAAGAAATTGGCTATGATGG TTGGCGGCTTGATTTCGTTAGAGGATTTTGGGGCGGCTATGTAAAGGATTACATGGACGCAACCAGCCCTGATTTTGCTGTTGGCGAGTATTGGGATTCC CTAAGTTATTCTTACGGGGAAATGGATCACAATCAAGATGCCCACAGGCAAAGAATTATTGATTGGATCAATGCAACAAGTGGAACTGCCGGTGCATTTG ACGTCACCACGAAAGGGATTCTTCATGCTACTACGTTGTTTACTGAGATGGTTTATTTCATGCAGGCACTCGAAAGGTGCGAGTATTGGCGTTTATCAGA TTCCAAAGGAAAGCCTCCAGGAGTTGTCGGATGGTGGCCTTCTCGTGCTGTTACGTTCGTAGAGAATCACGACACTGGCTCAACCCAGGGCCATTGGAGA TTTCCAGGCGGGAAAGAAATGCAAGGATATGCATACATCTTGACCCATCCAGGAACCCCTGCAGTATTCTTTGACCACGTTTTCTACTCCGACTATCGGT CCGAGATAGCAGCTCTCCTCGCTTTCAGAAACCAGCAAAAAATCCATTGCCGCAGCATAGTGAAAATTGCAAAGGCAGAAAGGGACGTGTATGCCGCCAT AATCGACGACAAAGTAGCAGTGAAGATCGGACCAGGCCACTTCGAACCCCAGAATGGTAACTGGAAATCAGCTCTTGAGGGGAGGGATTACAAGCTCTGG GAGTTATCCTCTTGA
AA sequence Show only first row Show all	>Lus10037211 pacid=23152492 polypeptide=Lus10037211 locus=Lus10037211.g ID=Lus10037211.BGIv1.0 annot-version=v1.0 MSSSVTVEPLLRCHRRMEASGFRKLACSSTSSSALNCPRQKQFFRGASFRKCKLLRGSVVIKASSTDTVVADTTDESPVDAFFRESFPVTRTETVEGKMF VRVDQENGEGNWQLTVGCTIPGNWILHWGVTYVDDLGSEWDQPPEHMKPYGSVPVKDYAVETPLQKASKDDPFYELKIDIDPNCAISAINFVLKDEETGT WYQYEGRDFKVVLGDNRLEGGNGTSSSNFPGPFLYNPLLKATTEDGIGEHNDDKGEDQKLEGFYEEQTITKHKAIENSVSVLVRRCPETFRNLVHLETDL PAAVVHWGVCRDDEKNWEIPPGPHPPETIIFKEKALRTSLQSKEDGGGCSGLFTLDEDLAGFLFVLKLNDSTWLKCMGNDFCIPLSSSSSSLSQPGQEQS KDAPASERGVGANQGSGTAFTDEIIKEIRHLVSGISAESSQKVKTKEAQESILQEIEKLAAEAYSIFRSSTPTFKEEAVLEEELKKKPPPLKFSGTGSGY EILLQGFNWESHKSGRWYMEFKEKAKDIASLGFTVVWLPPPTDSVSPEGYMPRDLYNLNSRYGNIDELKDLVRTLHKSGIKVLGDAVLNHRCAQYQNQNG IWNMFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWMCWLRKEIGYDGWRLDFVRGFWGGYVKDYMDATSPDFAVGEYWDS LSYSYGEMDHNQDAHRQRIIDWINATSGTAGAFDVTTKGILHATTLFTEMVYFMQALERCEYWRLSDSKGKPPGVVGWWPSRAVTFVENHDTGSTQGHWR FPGGKEMQGYAYILTHPGTPAVFFDHVFYSDYRSEIAALLAFRNQQKIHCRSIVKIAKAERDVYAAIIDDKVAVKIGPGHFEPQNGNWKSALEGRDYKLW ELSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	1.0	0.9218
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	6.3	0.8954
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	9.5	0.8911
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	12.6	0.8492
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	12.6	0.8773
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	12.8	0.8762
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10004405 [exp]	15.3	0.8324
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10028812 [exp]	17.1	0.8071
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	17.3	0.8534
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	18.2	0.8646

Compare expression of checked genes

Lus10037211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.