Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 281 / 1e-94 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 244 / 5e-80 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 192 / 7e-60 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 185 / 3e-57 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 102 / 5e-26 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036716 [exp] 459 / 6e-164 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10013271 [exp] 327 / 8e-113 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 327 / 3e-112 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 272 / 5e-91 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 270 / 2e-90 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 174 / 2e-52 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 172 / 1e-51 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 160 / 2e-47 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 160 / 2e-47 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033500 [exp] 323 / 3e-111 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 321 / 2e-110 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.017G078200 [exp] 293 / 3e-99 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 187 / 7e-58 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.007G055800 [exp] 183 / 3e-56 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.005G146800 [exp] 179 / 8e-55 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.018G093900 [exp] 177 / 6e-54 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.014G016300 [exp] 164 / 9e-49 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 141 / 3e-40 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 130 / 3e-35 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10037212 pacid=23152263 polypeptide=Lus10037212 locus=Lus10037212.g ID=Lus10037212.BGIv1.0 annot-version=v1.0 ATGAAGGACGACGGTGGTCCTGGACTCTACAAAGATATCGCCTGGCTATCAAGAGGCAGGGCTTTGATACGATTCCTCCTCCTCATCCTCCTCTTCTCTT TCGATTCCTTCTCCGATTTCGTCGTGGTCGATCGGGACTATGTGACGGACCACAAGTTCAGCATCACTACCTTCACCTCCGATGGAGCCGCAATCACATC GAGTGGTGTTAAGAAAGGTGACCAGTTCTTAGGTGACGTGACCATCAATCAGCTGAGGAACAAGAACATCTTAACTGACTTGAAGGTGGACACAGATTCT AACGTTTTCGCTACCATCACTGTCGGTGATACTGCTCCTGGTTTAACTGCGGTCTTTAGCTTCACGGTACCTGATCAGAGGTCTGGCAAGGTGGAACTCC AGTACAGGCATCAGTACACTGGGATAACCACTGGCATTGAAATGACTGCAAATCCTCTTGTTAACTTCTCTGGTTTAGTTGGCACCACTATGTTTTCCGT GGGGACTGACGTCTCCTTTGACACTGCCACTGGCAAGTTCACCAAATTGAATGCTGGTTTCAATTACAACAATGGTGCTGGTGTGCTTAGTAGCGTAACC TTGAACGACAAGGGAGATTCACTCGTAGCATCATACTGGCACTTCTTGGGTAAAAAGGTCGACACCTCCGTTGGAGCCGAGATGACTCACAGCTTCTCTA CCAACGAGAACACTCTGACCATAGGCACCCAGCATAGGCTCGACTGGCGTACCAATCTCCTGGGCAAAGTGGACACCTCCGGTAAAGTCAGTGCAGCCAT CGAGCAAGAGTTTTACGGAGCGTCTCGCTTCACCATCTCCGGGGAGGTAGACACGAAGGCAATCGAAAAGACTGCCAAGGTCGGACTCGCACTCTGCCTG ATTCCAAGAGTCTGA
AA sequence Show only first row Show all	>Lus10037212 pacid=23152263 polypeptide=Lus10037212 locus=Lus10037212.g ID=Lus10037212.BGIv1.0 annot-version=v1.0 MKDDGGPGLYKDIAWLSRGRALIRFLLLILLFSFDSFSDFVVVDRDYVTDHKFSITTFTSDGAAITSSGVKKGDQFLGDVTINQLRNKNILTDLKVDTDS NVFATITVGDTAPGLTAVFSFTVPDQRSGKVELQYRHQYTGITTGIEMTANPLVNFSGLVGTTMFSVGTDVSFDTATGKFTKLNAGFNYNNGAGVLSSVT LNDKGDSLVASYWHFLGKKVDTSVGAEMTHSFSTNENTLTIGTQHRLDWRTNLLGKVDTSGKVSAAIEQEFYGASRFTISGEVDTKAIEKTAKVGLALCL IPRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	0	1
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	5.5	0.7692
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	6.0	0.7621
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	7.2	0.7188
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	8.5	0.7393
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	8.7	0.7519
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	9.8	0.7188
					Lus10008758 [exp]	11.6	0.7126
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	13.0	0.7611
AT1G49230			RING/U-box superfamily protein...		Lus10005816 [exp]	13.6	0.7512
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	15.8	0.7714

Compare expression of checked genes

Lus10037212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.