Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69840 498 / 2e-180 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT5G62740 476 / 6e-172 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 422 / 3e-150 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 325 / 7e-112 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 50 / 6e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 45 / 3e-05 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036715 [exp] 546 / 0 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10033099 [exp] 485 / 2e-175 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 475 / 2e-171 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 458 / 1e-164 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 455 / 3e-163 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 305 / 3e-104 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 303 / 3e-103 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032909 [exp] 49 / 2e-06 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078000 [exp] 484 / 7e-175 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 475 / 2e-171 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G070500 [exp] 466 / 6e-168 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 320 / 4e-110 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 311 / 8e-107 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 286 / 1e-97 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 50 / 1e-06 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 49 / 1e-06 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 48 / 4e-06 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10037213 pacid=23152319 polypeptide=Lus10037213 locus=Lus10037213.g ID=Lus10037213.BGIv1.0 annot-version=v1.0 ATGGGTCAAGCTCTGGGTTGCGTCCAAGTGGATCAATCAAAAGTAGCTATCAAGGAAACTTTCGGGAAGTTTGACGAAGTGCTCCAGCCTGGCTGCCATT GTCTCCCGTGGTGCTTGGGAAGCAGTGTCGCTGGCCATCTCTCTTTGCGAGTTCAACAGCTTGATGTCAGCTGCGAGACCAAGACAAAGGATAATGTGTT TGTAACTGTTGTGGCATCTGTTCAATATCGAGCTCTCGCAGAGAAGGCATCAGATGCTTTCTACAAGCTAAGTAACACTAGGGGCCAGATCCAGTCATAT GTGTTTGATGTCATCAGAGCAAGTCTCCCCAAGCTGAATCTGGATGCTGCATTTGAGCAGAAGAATGACATTGCCAAAGCAGTCGAGCAGGAACTCGAAA AGGCCATGTCTCATTATGGCTACGAGATAGTTCAGACCCTGATTGTCGATATCGAACCTGACGTACACGTGAAGAGGGCCATGAACGAGATCAATGCAGC TTCCAGAATGAGGGAAGCAGCAAATGAGAGGGCAGAGGCAGAGAAGATACTCCAGATAAAACGAGCTGAAGCCGAAGCAGAATCCAAGTACCTAGCTGGA GTTGGCATTGCAAGGCAGCGTCAGGCCATTGTGGATGGTCTAAGAGACAGCGTGCTGGCTTTTTCGTCGAATGTACCGGGGACTAGTTCCAAGGATGTGA TGGACATGGTTCTCGTCACACAGTATTTCGACACGATGAAGGAGATAGGAGCGTCTTCCAAGAGCAGCTCCGTGTTCATTCCGCATGGCCCCGGTGCTGT GAAGGACATTGCTTCTCAGATTAGGGAAGGTCTTCTTCAGGCCAGCTCAACACAGTAA
AA sequence Show only first row Show all	>Lus10037213 pacid=23152319 polypeptide=Lus10037213 locus=Lus10037213.g ID=Lus10037213.BGIv1.0 annot-version=v1.0 MGQALGCVQVDQSKVAIKETFGKFDEVLQPGCHCLPWCLGSSVAGHLSLRVQQLDVSCETKTKDNVFVTVVASVQYRALAEKASDAFYKLSNTRGQIQSY VFDVIRASLPKLNLDAAFEQKNDIAKAVEQELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAANERAEAEKILQIKRAEAEAESKYLAG VGIARQRQAIVDGLRDSVLAFSSNVPGTSSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIASQIREGLLQASSTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	1.4	0.9204
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	2.4	0.8476
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	3.7	0.8841
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	3.9	0.8829
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011879 [exp]	5.7	0.8324
AT5G18310			unknown protein		Lus10042520 [exp]	6.9	0.8411
					Lus10029449 [exp]	7.1	0.8554
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	7.7	0.7647
					Lus10016654 [exp]	8.9	0.8170
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	9.2	0.8468

Compare expression of checked genes

Lus10037213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.