Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20050 976 / 0 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 302 / 7e-96 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 282 / 3e-88 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 266 / 2e-82 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 225 / 1e-66 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 225 / 2e-66 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 204 / 1e-58 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 196 / 1e-55 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 190 / 1e-53 TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 49 / 6e-06 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032467 [exp] 1042 / 0 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 1036 / 0 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10036714 [exp] 311 / 6e-104 AT3G20050 293 / 2e-97 T-complex protein 1 alpha subunit (.1) Lus10008406 [exp] 311 / 5e-99 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032176 [exp] 276 / 3e-86 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10026773 [exp] 273 / 4e-85 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10012380 [exp] 273 / 5e-85 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 271 / 1e-84 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 254 / 1e-77 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058500 [exp] 989 / 0 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 968 / 0 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 319 / 2e-102 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 313 / 4e-100 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 283 / 6e-89 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 283 / 7e-89 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 268 / 5e-83 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 263 / 3e-81 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 227 / 3e-67 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 227 / 4e-67 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10037214 pacid=23152415 polypeptide=Lus10037214 locus=Lus10037214.g ID=Lus10037214.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCATCCCAAACTCTGGATATTCAAGGCGAACGCCAGTCTGGCCAGGACGTCCGTGCTCAAAATGTGATGGCTTGTCAAGCAGTTGCAAACA TTGTTAAATCCTCACTAGGCCCCGTTGGGCTTGACAAGATGCTGGTGGATGATATTGGTGACGTGACCATTACCAATGATGGCGCAACAATTCTTAAGAT GCTAGAGGTGGAGCATCCTGCTGCCAAGGTGCTTGTGGAATTGGCTGAGCTCCAAGACAAAGAAGTTGGAGATGGAACAACTTCAGTTGTAATAGTAGCA GCAGAGTTGCTGAAGAGAGCTAATGATTTGGTGAGGAACAAGATCCATCCAACGTCGATAATCAGTGGATTCAGACTGGCAATGAGAGAAGCGTGCAAAT ATATTGATGAAAAATTGGCTGTGAAGGTTGAAAAACTTGGAAAGGATTCCCTGGTAAACTGTGCTAAGACCAGTATGTCTTCAAAATTGATAGCCAGTGA CAGCGACTTCTTTGCTAATTTGGTTGTTGATGCTGTACTATCAGTGAAGATGATAAATGTACGAGGAGAAATCAAATACCCAATCAAGGGTGTTAATATT CTAAAAGCTCATGGTAAAAGTGCAAGAGATAGTTACCTGTTGAATGGGTATGCCCTAAATACTGGCCGTGCTGCTCAAGGAATGCCAACCAAAGTCGCAC CTGCTAGAATTGCATGTCTTGACTTCAACCTTCAGAAGACAAAGATGCAATTAGGTGTACAAGTGGTTGTCACTGATCCCAGGGAGCTTGAGAAGATTCG TCAAAGGGAAGCTGATATGACAAAGGAGCGGATTGAAAAACTCCTAAAAGCGGGAGCCAACGTGATTTTAACTACCAAAGGAATTGATGACATGGCTCTA AAGTACTTTGTGGAGGCTGGAGCTATTGCTGTGAGACGCGTCCGTAAAGAAGATATGCGCCATGTTGCCAAAGCCACTGGTGCAACCATGGTTTCAACCT TTGCTGATATGGAAGGGGATGAGACATTTGATTCTTCACTTCTTGGGTCAGCTGATCAAGTCGTAGAAGAGCGCATTGCAGATGATGATGTCATTGTGAT AAAGGGGACCAAAAACACTAGTGCGGTTTCGTTGATTCTTAGAGGAGCAAATGACTACATGCTGGATGAGATGGAGAGAGCACTGCATGATGCTCTATGC ATTGTAAAGAGAACGTTGGAGTCCAACACAGTAGTGGCAGGTGGAGGTGCTGTTGAGGCTGCCTTGTCTGTGTACTTGGAGTATCTTGCGACAACTCTTG GATCAAGAGAGCAATTGGCTATTGCTGAATTTGCTGAATCTTTGCTGATCATACCGAAGGTGCTTGCTGTCAATGCTGCGAAGGATGCAACTGATTTGGT CGCGAAGCTACGTGCGCATCACCACACTGCACAGACCAAAGCTGATAAGAAACATCTCTCCAGCATGGGACTAGACCTTTTGAAGGGTAGCATTCGAAAC AACTTAGAGGCAGGAGTAATTGAACCTGCAATGAGCAAAGTGAAGATAATACAGTTCGCTACAGAAGCAGCCATAACAATTCTCCGAATCGATGACATGA TCAAGCTTGTCAAGGATGATGATGGTCAGGAGTAG
AA sequence Show only first row Show all	>Lus10037214 pacid=23152415 polypeptide=Lus10037214 locus=Lus10037214.g ID=Lus10037214.BGIv1.0 annot-version=v1.0 MALSSQTLDIQGERQSGQDVRAQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDKEVGDGTTSVVIVA AELLKRANDLVRNKIHPTSIISGFRLAMREACKYIDEKLAVKVEKLGKDSLVNCAKTSMSSKLIASDSDFFANLVVDAVLSVKMINVRGEIKYPIKGVNI LKAHGKSARDSYLLNGYALNTGRAAQGMPTKVAPARIACLDFNLQKTKMQLGVQVVVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL KYFVEAGAIAVRRVRKEDMRHVAKATGATMVSTFADMEGDETFDSSLLGSADQVVEERIADDDVIVIKGTKNTSAVSLILRGANDYMLDEMERALHDALC IVKRTLESNTVVAGGGAVEAALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATDLVAKLRAHHHTAQTKADKKHLSSMGLDLLKGSIRN NLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDDDGQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	0	1
AT5G57120			unknown protein		Lus10001434 [exp]	5.5	0.8121
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	6.9	0.8135
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	13.8	0.8129
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	15.2	0.7975
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	17.2	0.7584
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	20.3	0.7934
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	25.7	0.7454
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	28.6	0.8079
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10030284 [exp]	30.4	0.7243
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	30.9	0.7837

Compare expression of checked genes

Lus10037214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.