Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17900 759 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036712 [exp] 1543 / 0 AT3G17900 820 / 0.0 unknown protein Lus10013273 [exp] 1046 / 0 AT3G17900 696 / 0.0 unknown protein Lus10030797 [exp] 1020 / 0 AT3G17900 731 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033900 [exp] 556 / 0 AT3G17900 843 / 0.0 unknown protein Potri.008G194632 [exp] 209 / 1e-62 AT3G17900 195 / 5e-58 unknown protein Potri.008G194566 [exp] 161 / 5e-44 AT3G17900 229 / 6e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037215 pacid=23152285 polypeptide=Lus10037215 locus=Lus10037215.g ID=Lus10037215.BGIv1.0 annot-version=v1.0 ATGAATTTTCTGATACGGTCACCTAGTCGCCATGTAACACCTGAGAAGGTTCCTACTCCTGCTCATGAACCTGTTATGGACACACAGTACATAGCAAAAC CTACCAAGACTTTGGAAGGTCTTCTAACTGAGGATCCATTCCCCGAATCTCCGATTGCTGGAATTCGCCAAGGAGGGACTGATAAATTTGAAGCTGAGAG TGGCAGTGATGATGTTGGTTCGGCTGTGGGGAGAGATTCTTATGTTGTTGAGGGGCACTCGGATGTTTCTGAAGAAGAAGGATGGATCACCATTCCGCAT AAGGAACTTCCTGATGATTGGACTTCTTCGCCAAATTTAGAGTCACTACGTGCTATGGACAGACCATTCGTCTTTCCTGGTGAACAGGTTCATATACTAG CCTGTGTATCAGCATCTAATCAAGATACAGAAACCATTACTCCATTCAAAGTCGCTGCCCTAATGTCTAAAAGTGGTGTGGGACAAAGCCCCGAGAGACA AAATGGAAATGGAAAGGACAGAGAACCTGATGATGGAGAAATGAGTTCGGGTGGTCAAGTTACAGGCCAAGAAAGGGACAACTCGGTAGAAAAAAGGAGT GATCTAAAGGATGATGTTTCTGCTGGTGAATCCTTTCTCAGAATGGAGGATCACAAACGACAAACTGAAACCTTGTTGCAAAGATTCAAGAACTCCCATT TTTTTGTTCGGATTGCAGAGTCAGATGAGCCACTCTGGTCGAAGAAAGCTGGCCAAAACCGTCTGTTGGCTGACATGGATGATCAGATTTCCATTGGAAG TGGAACTGGAAAGGTCACACCTCATCTCAATGCTCTCATAGATAAAGGAAATTTTGACGCCAATGTTGCCGGTGGAGCTGCCAGGAACAGTGTTAACTGT TGGTCTCTTTCCAATGGAGATGTAGTGGTGCTTCTACAAGTTAATGTTGGCACTCATATTCTTAGAGATCCTGTGATTGAGATTCTTCAGTTCGAGAAAC AGATCAGAAATCTATCTCCCCAGCAACCGGATAGTCTGGTTTTTGCTCATCCTGACCCATATGGACTACTGCTAAAATGGTTGCTTCCTTTGGATAACGC TTTATCTCCGCCACCTCGTGCTTTATCCCCACCCAAAAGAGCTCCTATCCCAGTCACTCCTCCCACATCTCAGAAGCCTGTGCCTTCCGGTTCGCAGCTG TTCTCTAGTTTTAGAAGTTACTCTATGTCTTCACTACCGCAGAACAGTACTCCGCCTACTCAACCAATTAAAGTCCAAAGCTCTAAACCCAATTTTGACA TTGACGCTTGGGGAGAGTACTCATCTCAGAAGTTGAGGAGAGATCGTCAAAATGGTGGTGATGGAGTTCTCTCTTTCCGAGGTGTCTCATTGGAGCAAGA AAGATTTTCAGTACGTTGTGGACTCGAAGGCATGTACATTCCTGGAAAAAGATGGAGGAAGAAACTTGAAATCATTCAACCTGTAGAGATTCGTTCCTTT GCTGCTGATTGTAACACAGATGATTTGATTTGTGTTCAGATAAAGAACATTTCTCCAACACACTTGCCCGGCATAGTGGTGTACATAGATGCTATAACAA TGGTTTTTAACGAGGCTCCAAAAGGTGGCCTACCTCTGTCCTTGCCAATAGCATGCATTGAAGCTGGAGATGATCATTGTTTACCAAATCTTGCCCTCAG GAGAGGCGAAGAGCACTCTTTTATCCTCAAACCAGCACCATCAATGTGGAAGAGTCCCAAGGTTCACGGGAAAAGTACTTCATTTTCATCAGCTTTACGT TCTTCACATCATGCTGTTGAAGGGGGAAGTGGTAATTCAAATCCTGATATATACGCTATTATGGTATCTTGTCGCTGCAACTACACTGAGTCGAGACTGT TTTTCAAGCAGCCAACTGATTGGCGACCACGTTTCTCAAGGGATCTTCTGATCTCTGTCGCACCCGAACTGTCACACCGGTCTTCTCCCTATGAGAGAGT CTCCCATCTTCCAGTTCAGGTCTTGACTCTTAGAGCCTCCAATTTAACAGCTGAAGATCTCACTCTTACAGTTCTTGCTCCAGCCTCTTTCACCGCTCCT CCTTCAGTTGGGTCCTTGATTTCAACACCATCAACTCCGATGTCTGCACAAATTCGTCCGTCTGGGCCAACAATACAACACCTCGGGAGCAAAATGCACA GCCGGGTGGCTTCTGCACCTCCTTTTCTCGAACAACTGAACGAGGGAGGTCAATCTACTTCCCTCGGCAGCCAGTCCAACACCATATCTGATGTCATCTC AAGTACTGATCTCGGTTGCACTCATCTATGGCTACAAAGTAGAGTTCCACTAGGGTGCGTCCCTGCAAATTCAACAGCCACGATAAAGCTCGAGCTACTT CCCTTAACCGACGGCATCATCACTCTAGACACCTTGCAGATAAATGTCAAAGAGAAAGGTCTAACGTACATCCCCGAGTACTCCCTCAAGATAAATGCTA CGTCTAGCATTTCTGCCGTCATAGTGTAG
AA sequence Show only first row Show all	>Lus10037215 pacid=23152285 polypeptide=Lus10037215 locus=Lus10037215.g ID=Lus10037215.BGIv1.0 annot-version=v1.0 MNFLIRSPSRHVTPEKVPTPAHEPVMDTQYIAKPTKTLEGLLTEDPFPESPIAGIRQGGTDKFEAESGSDDVGSAVGRDSYVVEGHSDVSEEEGWITIPH KELPDDWTSSPNLESLRAMDRPFVFPGEQVHILACVSASNQDTETITPFKVAALMSKSGVGQSPERQNGNGKDREPDDGEMSSGGQVTGQERDNSVEKRS DLKDDVSAGESFLRMEDHKRQTETLLQRFKNSHFFVRIAESDEPLWSKKAGQNRLLADMDDQISIGSGTGKVTPHLNALIDKGNFDANVAGGAARNSVNC WSLSNGDVVVLLQVNVGTHILRDPVIEILQFEKQIRNLSPQQPDSLVFAHPDPYGLLLKWLLPLDNALSPPPRALSPPKRAPIPVTPPTSQKPVPSGSQL FSSFRSYSMSSLPQNSTPPTQPIKVQSSKPNFDIDAWGEYSSQKLRRDRQNGGDGVLSFRGVSLEQERFSVRCGLEGMYIPGKRWRKKLEIIQPVEIRSF AADCNTDDLICVQIKNISPTHLPGIVVYIDAITMVFNEAPKGGLPLSLPIACIEAGDDHCLPNLALRRGEEHSFILKPAPSMWKSPKVHGKSTSFSSALR SSHHAVEGGSGNSNPDIYAIMVSCRCNYTESRLFFKQPTDWRPRFSRDLLISVAPELSHRSSPYERVSHLPVQVLTLRASNLTAEDLTLTVLAPASFTAP PSVGSLISTPSTPMSAQIRPSGPTIQHLGSKMHSRVASAPPFLEQLNEGGQSTSLGSQSNTISDVISSTDLGCTHLWLQSRVPLGCVPANSTATIKLELL PLTDGIITLDTLQINVKEKGLTYIPEYSLKINATSSISAVIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17900			unknown protein		Lus10037215 [exp]	0	1
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	4.0	0.8988
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10033961 [exp]	6.2	0.9061
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	7.1	0.9184
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	9.1	0.8726
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	19.4	0.9037
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	19.8	0.8821
AT4G00800		SETH5	transducin family protein / WD...		Lus10002679 [exp]	20.4	0.9041
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	20.7	0.9048
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	20.9	0.9050
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	21.8	0.8550

Compare expression of checked genes

Lus10037215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.