Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02710 424 / 7e-148 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT5G58140 191 / 9e-55 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 123 / 2e-30 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G68050 72 / 1e-13 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G18915 65 / 3e-11 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT5G57360 64 / 5e-11 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036711 [exp] 672 / 0 AT2G02710 389 / 1e-133 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10036144 [exp] 127 / 1e-31 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 126 / 2e-31 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 124 / 7e-31 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 123 / 2e-30 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 99 / 5e-22 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10013856 [exp] 80 / 4e-16 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10030757 [exp] 69 / 3e-12 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 69 / 3e-12 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053500 [exp] 490 / 7e-174 AT2G02710 431 / 2e-150 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.008G180700 [exp] 478 / 3e-169 AT2G02710 427 / 5e-149 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.001G342000 [exp] 125 / 3e-31 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 125 / 5e-31 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 122 / 4e-30 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.018G090800 [exp] 68 / 3e-12 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G135200 [exp] 67 / 8e-12 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G105700 [exp] 64 / 1e-10 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.006G166300 [exp] 62 / 2e-10 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0183 [flax] [poplar] PAS_Fold PF08447 [flax] [poplar] PAS_3 PAS fold
Representative CDS sequence Show only first row Show all	>Lus10037216 pacid=23152578 polypeptide=Lus10037216 locus=Lus10037216.g ID=Lus10037216.BGIv1.0 annot-version=v1.0 ATGGAATCGCAGCTAGGGTTGTTGATCGGGAACTCCTTCAATAGCAGGTACTCCATCTGGGCACGCGAGGTGCTCGACGAATTGCCCGACAGCTTCACCA TTACTGACCCTTACATATCGGGCCACCCGATCGTGTTCGCCAGCCGGCGGTTCCTCGAGATGTCCGGCTACTCTCTCGACGAAGTGGTGGGGAAGAACGG GAGGGTGTTCCAAGGTCCCAACACTTGTAGGAGGTCTGTGATGGAGATTCGTGAAGCGATTCGTGGAGAGCGCGGGGTTGAGGTGAATCTTTTGAACTAC CGGAGAGACGGGACGCCGTTTTGGTTGCTGTTCCGGATGACGCCGGTGTTTTGCAAGGAGGAAGGCAAGGTTGTTCATTTCGTCGCCGTTCAGGTTCCCA TCCTCCGGAAGAGGAGGAATGGGGAGAGGCTTTGTGAGGAGGTTTTGTCTAGCTCTTGTAGAAGGGAAGTCTGCTCCAATTCTGATGTTGAATTGGGTGG AGTTTCAGCATCGGAGTCTGATTGTAGAGGGATTGAAGAGCAATGTGAGGCAAGTGACAGAGAGAAACAAATAGCTGCTACTGCTATCGGGAATGTGTTG TCGGTGCTAACGCATTACAGTGTATCAACGGGGAGATTGGTGTGCGAACAGAGATTCGGGGCAAGCCTTGTCAGTTCATCTTTACATATTTCTCTTGGTA GAATCAAACAAAGCTTTGTATTGATGGATCCATGCTTACCGGATATGCCTATTGTTTATGCTAATGATGCCTTCTTAAGATTGACAGGGTATGCTAGAGA TGAGGTTTTAGGGCACAGTTGTAGCTTCTTGAACGGTGTCGATACGGATTCCTCAGTACTGGATCAGTTGACACTAAGCATTCAAGCACAACAAGCATGC TCAGTACGTATTTTAAATTACAGGAAAGACAAGAGCTCATTTTGGAATCTTCTTCACGTATCACCGGTCCGTAATGCCAAAGGCAAGATTGCATACTTTG TGGGTGTCCAGATAGAAGAAGGCAGTGAGGACACACACGGGTTTAGCCCTGAGATGCGGCAGCTTAGCGTCATCGGGTCAATCAAGGTGGCCGTAAGGAG TTCGTCAATGTGCTCTACCTCCTCCAAATCATGGTAG
AA sequence Show only first row Show all	>Lus10037216 pacid=23152578 polypeptide=Lus10037216 locus=Lus10037216.g ID=Lus10037216.BGIv1.0 annot-version=v1.0 MESQLGLLIGNSFNSRYSIWAREVLDELPDSFTITDPYISGHPIVFASRRFLEMSGYSLDEVVGKNGRVFQGPNTCRRSVMEIREAIRGERGVEVNLLNY RRDGTPFWLLFRMTPVFCKEEGKVVHFVAVQVPILRKRRNGERLCEEVLSSSCRREVCSNSDVELGGVSASESDCRGIEEQCEASDREKQIAATAIGNVL SVLTHYSVSTGRLVCEQRFGASLVSSSLHISLGRIKQSFVLMDPCLPDMPIVYANDAFLRLTGYARDEVLGHSCSFLNGVDTDSSVLDQLTLSIQAQQAC SVRILNYRKDKSSFWNLLHVSPVRNAKGKIAYFVGVQIEEGSEDTHGFSPEMRQLSVIGSIKVAVRSSSMCSTSSKSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10037216 [exp]	0	1
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	3.0	0.8151
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	4.0	0.8505
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10019342 [exp]	5.1	0.8584
AT1G54520			unknown protein		Lus10001794 [exp]	5.5	0.8407
AT1G28140			unknown protein		Lus10034291 [exp]	14.8	0.8560
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	15.3	0.8522
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	26.8	0.8114
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	28.2	0.7989
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	33.1	0.7542
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001934 [exp]	34.9	0.7624

Compare expression of checked genes

Lus10037216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.