Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 732 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 664 / 0 Major facilitator superfamily protein (.1.2) AT5G62730 593 / 0 Major facilitator superfamily protein (.1) AT1G59740 343 / 6e-111 Major facilitator superfamily protein (.1) AT3G25280 330 / 2e-106 Major facilitator superfamily protein (.1) AT2G02040 330 / 5e-106 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G33440 330 / 2e-105 Major facilitator superfamily protein (.1) AT3G25260 327 / 2e-105 Major facilitator superfamily protein (.1) AT5G01180 319 / 9e-102 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 315 / 3e-100 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036710 [exp] 1025 / 0 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 797 / 0 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 790 / 0 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 678 / 0 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 408 / 7e-136 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 392 / 1e-129 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 384 / 2e-126 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 376 / 1e-123 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 360 / 4e-118 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034300 [exp] 766 / 0 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 669 / 0 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.014G036200 [exp] 413 / 4e-138 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 400 / 8e-133 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 397 / 5e-132 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G229000 [exp] 363 / 2e-118 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 357 / 4e-116 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 356 / 2e-115 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.002G249100 [exp] 341 / 7e-111 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 330 / 1e-105 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10037217 pacid=23152408 polypeptide=Lus10037217 locus=Lus10037217.g ID=Lus10037217.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTCGCGGTGGCCGCCACCGGCGGGAGATGGGAAGGGTACGTGGACTGGAGGAATCGGCCGGCCGTTCGTGGCCGCCATGGTGGCATGCTCC CCGCCTCCTTCGTTCTCGGGGCGGAGGCGTTGGAGAACTTGGCGTATTTGGCGAATGCGAGCAACTTGGTGATGTACATGTCGGAGTACATGCACTTTAG CCCGTCCAAGTCTGCAAATAATGTCACGAACTTCATGGGGACTGCTTTCCTTTTGGCTCTCCTCGGTGGCTTTCTCTCTGATGCCTTTTTCACCACTTAT CAAATCTACCTTATCAGTGCCTCCATCCAATTCCTGGGTCTGGTGATTCTAACAGTGCAAGCAAGGTCACCCTCACTGAAGCCAGAGCACTGCATCAGCA GCCACGTGGAGCAATGTCACCAAGTAGAAGGAGGCCAGGCTGCGATGCTATTCATAGGCCTTTACTTGGTGGCACTCGGAGTTGGCGGCATCAAGGGCTC CTTGCCCTCACATGGCGCCGAGCAATTCGACGACAGCACTCCCAAAGGGAGGAAGCAGAGGTCGACATTCTTCAACTACTACGTCTTCTGCTTGGCATTC GGTGGATTGATCGCTGTCACGTTCGTGGTCTGGCTCGAAGACAACAAGGGTTGGGAGTGGGGGTTTGGCTTCTCCACCATTGCTATTTTCCTGTCCATCC CTCTCTTCCTCTCTGGCTCCCCGGTCTACCGGAGCAAGATCCCCTCCGGGAGCCCTCTCACCACCATTTCCAAAGTTTTGGTGGCAGCAGCAATCAACAG GTGTCTGAACAGAGCTCCAAGCAATGCAATAGCAAACTTAGCAGCAAGTCCATGCAACCCAACAGACAAACCAGCATCAACAGAGCAAGGAATCACCAAT TCCAATCATCTGACACAACCAACCAAGAGCCTCACATGCTTAAACATTGCAGTGATGAACAAACCCTTTGAATGCACAGTGCAACAAGTAGAAGATGTCA AAGTCGTGATCAAAGTCCTGCCGATTTTCGCCTGCACAATCATGCTGAACTGCTGCCTAGCTCAGCTATCAACATTCTCAGTCCAACAAGCAGCAACAAT GGACACCAAGCTAGGCTCACTCAAAATCCCACCAGCTTCCCTCCCCATCTTCCCGGTCCTGTTCATCATGATCCTTGCACCGATCTACGACTCCTTCATC GTGCCATTTGCCAGGCGAGTCACCAAATCCGAGATGGGGATCACTCACCTCCAACGAATCGGGGTCGGATTGGTCCTTTCCATCCTAGCCATGGCTGTTG CAGCACTTGTGGAGGTCAAGAGGAAAAGGGTAGTTGCTAGTATTGTAACAGATTCAACTGAGCCATTGCCAATCACATTCTTGTGGGTGGCATTTCAGTA CTTGTTCTTGGGATCGGCCGATCTGTTCACACTGGCGGGACTGCTCGAGTTCTTCTTCTCGGAGGCGCCTTCGAGGATGAGGTCGTTGGCCACTTCGCTG TCATGGGCTTCGCTGGCTACGGGGTACTACCTTAGCTCGATGATCGTGTCGTTGGTGAACAATGTGACTGATAAGTGGCTGTCAGGGAAGAACATCAACC ACTATCACTTGGAGAGATTCTACTGGATGATGTGTGTTCTTAGTGCCTTGAACTTCTTGCATTACCTTCTCTGGGCTTGCCGGTACAAGTACAGATCAAC TAGTACTGGTACTGCTGCTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10037217 pacid=23152408 polypeptide=Lus10037217 locus=Lus10037217.g ID=Lus10037217.BGIv1.0 annot-version=v1.0 MEEVAVAATGGRWEGYVDWRNRPAVRGRHGGMLPASFVLGAEALENLAYLANASNLVMYMSEYMHFSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTTY QIYLISASIQFLGLVILTVQARSPSLKPEHCISSHVEQCHQVEGGQAAMLFIGLYLVALGVGGIKGSLPSHGAEQFDDSTPKGRKQRSTFFNYYVFCLAF GGLIAVTFVVWLEDNKGWEWGFGFSTIAIFLSIPLFLSGSPVYRSKIPSGSPLTTISKVLVAAAINRCLNRAPSNAIANLAASPCNPTDKPASTEQGITN SNHLTQPTKSLTCLNIAVMNKPFECTVQQVEDVKVVIKVLPIFACTIMLNCCLAQLSTFSVQQAATMDTKLGSLKIPPASLPIFPVLFIMILAPIYDSFI VPFARRVTKSEMGITHLQRIGVGLVLSILAMAVAALVEVKRKRVVASIVTDSTEPLPITFLWVAFQYLFLGSADLFTLAGLLEFFFSEAPSRMRSLATSL SWASLATGYYLSSMIVSLVNNVTDKWLSGKNINHYHLERFYWMMCVLSALNFLHYLLWACRYKYRSTSTGTAAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10037217 [exp]	0	1
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	3.2	0.9326
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029673 [exp]	3.9	0.9002
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	4.0	0.9314
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	5.2	0.9138
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	7.2	0.9251
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10026276 [exp]	8.4	0.9128
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	8.5	0.9305
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	10.2	0.9244
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	11.2	0.8967
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	11.8	0.9198

Compare expression of checked genes

Lus10037217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.