Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27060 423 / 2e-147 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 152 / 9e-42 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 137 / 5e-35 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 134 / 5e-34 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G23270 127 / 1e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 124 / 1e-30 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 123 / 4e-30 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 118 / 2e-28 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 112 / 2e-27 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 113 / 9e-27 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036707 [exp] 633 / 0 AT1G27060 375 / 1e-128 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10010038 [exp] 159 / 2e-47 AT1G27060 134 / 1e-38 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10008730 [exp] 157 / 1e-45 AT1G27060 132 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 148 / 6e-40 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 146 / 2e-39 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10009701 [exp] 128 / 1e-31 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 127 / 2e-31 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10012474 [exp] 116 / 8e-31 AT1G27060 89 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 121 / 2e-29 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G107000 [exp] 503 / 9e-179 AT1G27060 446 / 1e-156 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 144 / 2e-38 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 137 / 7e-35 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 134 / 9e-34 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 131 / 6e-33 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 127 / 1e-31 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 120 / 5e-29 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 115 / 2e-27 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G071000 [exp] 113 / 2e-27 AT5G08710 515 / 0.0 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.005G190000 [exp] 113 / 8e-27 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10037219 pacid=23152342 polypeptide=Lus10037219 locus=Lus10037219.g ID=Lus10037219.BGIv1.0 annot-version=v1.0 ATGAGAGCTTTGGTCGCGGGCCGAATCGCGACAAACCAGCGATTCAGAAACATAGATGAAGAAGACGAGAGAAACGAAAAACAGGAACAAATCTGGAGCT GGGGAGCTGGAACAGACGGGCAGCTCGGAACTGGGAAGCTAGAGGATGATCTCCTCCCTCAGCTCCTCCGCGTGCCGCCGCTCGCCGCCGCCGGGCCTAT CTCCATGCTCGCCTGCGGCGGAGCTCACGTTATAGCTTTGACAACCGGTGGGAGAGTATTAACATGGGGAAGAGGAACATCTGGCCAGCTCGGCCATGGA GATACGTTGAACTGCTTAACCCCAAAGGTTGTGGAGTCTTTGGATAATGATGTAATAGTAACTCATGTCTCTGCTGGATGGAGCCACTCTGGATTTGTTT CAGATAAAGGGTGTCTTTTCACTTGTGGGGATGGCTCATTTGGCCAGCTTGGCCATGGCGATCACTCAAATTGCAGCAGTCCTGTTAAAGTCTCTTACTT TGACAGTAGTAAGCATGTTGATCAGATGGCTTGCGGGATGCGACATTCACTCGTCTTGCTCAAGGGTAGTCTGGGGAACCAGATTTATGGTTTTGGCTCT GGGAAGCGTGGCCAGTTGGGTGTTTCGGCGGAGAAGGTCAAATCAGCGAGTCATCCTCGAGTTACTTTGGGGTTTGAGGACGTTGAGATAGCTAGCGTTA GCGCGAATGGTGATCATAGTGCCGCATTGTCCGGTGATGGGAAGCTGTATACATGGGGAAGAGGGTTCAGTGGTTCTCCAGATAGCAATGTCCCTTTCTG TTCATTTCCATCATTGCGGTTTGACCGAGTTGCTCTTGGATGGAATCATGCCTTACTATTGGACGATGATGGTGAAGTTTACATGCTTGGTGGCAATCGA CATGGAGTGCTTAGTGACGCGGAGAAAATGATAAACACAGCAGCAAACCATCTTCCTGATTCTTCGACCGAGGCTGGTTTAGAGAGAGTGCTGAATCCTG GCGGAGCGAAGGTTGTTCAGATTGCAGCTGGATCAGAGCATTCTGCTCTTGTTACAATTGACGGAGCTGTAATGACATGGGGATGGGGCGAACACGGTCA GCTTGGATTAGGGAGTACAAGCGATGAAACAAATCCACAACCGATAAGGAATATTGAGAAGGAAGCCGTCACCTCAAGCGTTTATTGTGGAAGTGGATTC ACGTACGTAATAAAGTCTGTACATTCCTAA
AA sequence Show only first row Show all	>Lus10037219 pacid=23152342 polypeptide=Lus10037219 locus=Lus10037219.g ID=Lus10037219.BGIv1.0 annot-version=v1.0 MRALVAGRIATNQRFRNIDEEDERNEKQEQIWSWGAGTDGQLGTGKLEDDLLPQLLRVPPLAAAGPISMLACGGAHVIALTTGGRVLTWGRGTSGQLGHG DTLNCLTPKVVESLDNDVIVTHVSAGWSHSGFVSDKGCLFTCGDGSFGQLGHGDHSNCSSPVKVSYFDSSKHVDQMACGMRHSLVLLKGSLGNQIYGFGS GKRGQLGVSAEKVKSASHPRVTLGFEDVEIASVSANGDHSAALSGDGKLYTWGRGFSGSPDSNVPFCSFPSLRFDRVALGWNHALLLDDDGEVYMLGGNR HGVLSDAEKMINTAANHLPDSSTEAGLERVLNPGGAKVVQIAAGSEHSALVTIDGAVMTWGWGEHGQLGLGSTSDETNPQPIRNIEKEAVTSSVYCGSGF TYVIKSVHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27060			Regulator of chromosome conden...		Lus10037219 [exp]	0	1
AT5G41800			Transmembrane amino acid trans...		Lus10003903 [exp]	1.4	0.9256
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	6.5	0.8954
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	17.7	0.8976
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	19.1	0.9213
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	27.1	0.8904
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	37.5	0.8968
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	39.0	0.8982
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	39.8	0.9037
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	41.5	0.8949
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	42.0	0.8882

Compare expression of checked genes

Lus10037219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.