Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27070 311 / 9e-100 5'-AMP-activated protein kinase-related (.1) AT5G03420 77 / 1e-14 5'-AMP-activated protein kinase-related (.1) AT5G39790 65 / 3e-11 5'-AMP-activated protein kinase-related (.1) AT1G09020 62 / 6e-10 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT4G16360 48 / 8e-06 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT3G01510 46 / 5e-05 LSF1 like SEX4 1 (.1) AT3G52180 44 / 0.0003 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036706 [exp] 819 / 0 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1) Lus10030802 [exp] 299 / 4e-94 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1) Lus10013279 [exp] 286 / 5e-90 AT1G27070 198 / 1e-56 5'-AMP-activated protein kinase-related (.1) Lus10028512 [exp] 65 / 2e-11 AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1) Lus10004490 [exp] 56 / 4e-08 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 56 / 5e-08 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 52 / 3e-07 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10006516 [exp] 51 / 2e-06 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 49 / 3e-06 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194300 [exp] 360 / 8e-119 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.010G034600 [exp] 351 / 5e-115 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.017G125400 [exp] 70 / 5e-13 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 67 / 1e-11 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.009G021600 [exp] 50 / 2e-06 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.008G029300 [exp] 48 / 1e-05 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.010G232200 [exp] 47 / 2e-05 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.008G216800 [exp] 46 / 5e-05 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.001G220800 [exp] 45 / 5e-05 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.010G023500 [exp] 44 / 0.0003 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037220 pacid=23152282 polypeptide=Lus10037220 locus=Lus10037220.g ID=Lus10037220.BGIv1.0 annot-version=v1.0 ATGCTTTCCGTCACAACAGTCAACACCCATCTCATCCTTTCCCCAGATTCTCTCCCTCGTTCATTTCGCATCTGCTGTAGGAGCGCATCAGTAGTTGAGG CATCGAGGGAGCAAGAAAGGAATCACAATGTTGTTCATCTCCACTGTACAATGCTGATGAAGGAAGAAGCGCCTCAGCTGGGGTTTCTTCTTAATGTCAG GAAACGGAGTGTTAGGAATCCGTGGTGGGAGTGTGGTGTTAGCAACGATTGGGGGAGTGGTGTAGGAGATTCTTCATTGGAAGATGAAATTTTGGATTTT ATGAGGAATTCAGAAGAACCGGGGATGTTCCCGTCGAAGAGGCAGTTGATTGGTGCAGGGAGAATGGATCTTGTGGAGCGTATTGTGAGGGAAGGCGGGT GGATGGCTTCAGGGTGGGATTTGGAAGGAGATGAAGGCGATACTTTGTACTCTTCTGCTTCTTCGTCAGGCAGATCACTTTTTCTGTTGTTTGGGATGAA ACAGTTTCCAGAACTTGTATCTCAACCTTATCCTTCCTTGGATCTTTATAAAACTCTGACGTGTCTATATCGTTGTTCATATGGACTCAGAGAAACTGCT GCCGAGGATAATTCTGGGATCGAGGGTATATTGAATAGATTGGAGACTGAAAGGAGTATGAATTTTGGATTTAAATTGCCAGAGAGTAGAGAAGATGCTC ATGTTTGGGGTCAGCAGCATCCTTTGTACGGTGAGCCTTCTACCACCTCTGAAAGTCCGACAGTTCCTGACATAAATGGCAGAATCGACGATTCTCAGGG AACGTCTGGTCACTTCAGACAATGCACAAATGTTAATGGTTTGGAGAACTCAGTTAAGCCTGACGCTTGGAGAACTCAGCATGCACCGAGGGAAGAATCT TCATCTCTGAAATCTGAAGCAGGCGCGATTGATGCTAAAAAAACTGGAACTGGGAATGAACTGGATACTTCAGGAACCGTTGAGAGCCATAGTAAACATG CAAACAAGAATGCTAACCGTTCTGAAGCAGGGTTGGATCCCATAAGAACTCGGCTTCGGAAAATAGAATCTGAGCTTTTGGCTGTACTGAATGCATTGAA ATCAGATGCCAATGCAGACGAGTCATACAAGGCTAGTCAAAGCGCAACTGACGACGAGCTTTCGAAGCTCAATGATGCTTTCGAATTCCGCGAAACTGAA ATAATGAGTCAGAAGGCCAAGTTGCGGTCAATTCGAGCAAAGTTAGCCGTGCTGGAGGGCAGACAGGCGCTTGCAGTAATCGATGCACAAAGACTCTTAG AACAAAAACAGAAGAGAATCACTGATATTGACAAGGCTGTACAGCTTCTTCGCACTGTGAGCATAGTCTGGCCTAATAACAGAGCTTCAGAAGTGTTCTT AACCGGATCGTTTGATGGATGGGCAACCCAGAAGAAGATGGAGAAGTCAATCAGTGGTGTCTTCTCCTTGAACATGAAACTCTATCCCGGCAAGTACGAG ATCAAGTTCATTGTTGATGGTGAGTGGAAGACTGATCCCCTGCGTCCCATTGTTAACAATAATGGGTTTGTAAATAATTTCCTCATAATCCAATAA
AA sequence Show only first row Show all	>Lus10037220 pacid=23152282 polypeptide=Lus10037220 locus=Lus10037220.g ID=Lus10037220.BGIv1.0 annot-version=v1.0 MLSVTTVNTHLILSPDSLPRSFRICCRSASVVEASREQERNHNVVHLHCTMLMKEEAPQLGFLLNVRKRSVRNPWWECGVSNDWGSGVGDSSLEDEILDF MRNSEEPGMFPSKRQLIGAGRMDLVERIVREGGWMASGWDLEGDEGDTLYSSASSSGRSLFLLFGMKQFPELVSQPYPSLDLYKTLTCLYRCSYGLRETA AEDNSGIEGILNRLETERSMNFGFKLPESREDAHVWGQQHPLYGEPSTTSESPTVPDINGRIDDSQGTSGHFRQCTNVNGLENSVKPDAWRTQHAPREES SSLKSEAGAIDAKKTGTGNELDTSGTVESHSKHANKNANRSEAGLDPIRTRLRKIESELLAVLNALKSDANADESYKASQSATDDELSKLNDAFEFRETE IMSQKAKLRSIRAKLAVLEGRQALAVIDAQRLLEQKQKRITDIDKAVQLLRTVSIVWPNNRASEVFLTGSFDGWATQKKMEKSISGVFSLNMKLYPGKYE IKFIVDGEWKTDPLRPIVNNNGFVNNFLIIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27070			5'-AMP-activated protein kinas...		Lus10037220 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	5.6	0.7849
					Lus10015768 [exp]	9.2	0.7665
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	15.2	0.7392
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	19.8	0.7520
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	21.1	0.7704
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	21.7	0.7700
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	21.8	0.7698
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	22.2	0.7274
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040007 [exp]	27.2	0.7665
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	28.6	0.7130

Compare expression of checked genes

Lus10037220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.