Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69870 648 / 0 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 571 / 0 NRT1.6 nitrate transporter 1.6 (.1) AT1G69860 455 / 4e-154 Major facilitator superfamily protein (.1) AT5G62680 451 / 2e-151 Major facilitator superfamily protein (.1) AT1G18880 437 / 1e-146 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 435 / 4e-145 Major facilitator superfamily protein (.1) AT1G68570 385 / 3e-126 Major facilitator superfamily protein (.1) AT3G54140 382 / 2e-125 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 377 / 2e-123 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G52190 373 / 2e-121 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036705 [exp] 1155 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 452 / 2e-152 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 443 / 2e-148 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 414 / 4e-137 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10024345 [exp] 394 / 7e-130 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 384 / 9e-126 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 378 / 1e-123 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10041466 [exp] 378 / 8e-123 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 375 / 2e-122 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034700 [exp] 688 / 0 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.017G076800 [exp] 518 / 4e-178 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 505 / 6e-173 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 483 / 3e-164 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 454 / 4e-153 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.006G091600 [exp] 393 / 3e-129 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 393 / 3e-129 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 389 / 5e-128 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103200 [exp] 388 / 2e-127 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 379 / 1e-123 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10037221 pacid=23152497 polypeptide=Lus10037221 locus=Lus10037221.g ID=Lus10037221.BGIv1.0 annot-version=v1.0 ATGGCAGCCGTCGTTAAAAATCCCTGCGCCAGTCTCCACTACTGGTCATGCTGCCGTGGCAAGGACGTCGATGAGCAGAAGGAGCAGCAACTCGGGAGTC CAAATTCGCTGTCGATTGTCCCGTCGACGGGGACTCCCAAGCTTCCTGAAGACAACAACCGCAAGAAGAAGCCCGGCGGATGGAGAGCCATGCCTTACGT GCTAGGAAACGAGACGTGCGAGAGGCTGGCGACGGTGGGACTGTTTGCGAACTTTCAGGTGTACCTAACAAGAGAGTTCCATTTGGAGCAGGCGAAAGCA GCACAGCTACTCAATGTCTGGTCTGGATTCACTAACTTCATGCCGCTGTTGGGGGCTTTCATCTGCGATGCTTACATCGGACGGTTCAAAACCATTGCTT TCTCCGTCTTCGCCGAACTTCTGGGGATGGTGACCATCACGTTAACAGCATGGCTGCCGCACCTCCAGCCACCCAAATGCGATATCGCTTTAAAGAGCGG TGTAGTCTGTCTGGGCCCCACCTCAGGCCAACTTGGGGTCCTGCTTACAGGTCTGTGCCTTCTGTCAGTAGGAACAGGAGGGATCAGGCCATGCAGCATC CCGTTTGGGGTCGATCAGTTCGATGCCCGGACGGAGGAAGGAGTGAAGGGGATCAACAGCTTCTTCAACTGGTACTACATGACCTTCACCGTCGTCATTC TGTTGTCGTTGACGGTGATCGTCTACATCCAGGACTCGTTCAGCTGGGTCGTCGGGTTCGGGATCCCGACTGTTTTCATGGTGGTGGCCATCTTCTTGTT CTTTATAGGGAGGAAGATCTACGTCCACGTCAAGCCCGAGGGGAGCGTGTTCTCGGGGATCGCTCACGTGTTCTGTGCCGCTTATAAGAAGCGGAACCTT AAGCTCGACGACGACAGTGATGAGGTTGCTGTTCTTGATGGGAAGTTTTATGATCCGCCGGCTAAAGCTACCGTCATTCACAAGCTCCCCCTCACCAAGC AGTTTAGATTTCTGAACAAAGCAGCATTAATCCAAGAAGGCGAAGTCAACGAACACGGCATGCCGTCAAACCCGAGGAGCCTAGTCAGCATCCAAGAAGT TGAAGAAGTCAAATGCCTGTTGAAAGTCATACCGGTTTGGTCAGCCGGGATCATAAGCCTGACGGCCATCTCCCAACAGGGTACGTTCACGGTCTCCCAG GCGATGATCATGGACCGTCACCTGGGACCCAAGTTCGAGATCCCACCCGGCACGATGACTGTGATATCCCTAATCGTCATCGGCTTGTGGCTCCCTTTTT ACGACCGGATCTTGGTCCCTAGGTTGAGGAAGATCACCAAGTACGAGACGGGGATCACGCTCCTCCAACGAGTGGGGATCGGGATAGTGTTTTCTATACT GTCCATGGTCGTTGCGGGGCTGGTGGAGAGGGACAGGCGGGAGTTTTCGAACACGCACCCCGATTCGCCTCCCTTCTCGGTGATGTGGCTAGCCCCGCAT CTGGCCATCATGGGGATGTGCGAGGCGTTTTTGTTCATCGGGCAGATTGAGTTCTTCAACAAGGAGTTCCCCGAGAACATGAGGAGCATCGCGAACGCGT TGTTTTCAGTGTCGTTCGCGATTGCTAATTACTTGAGCAGCGTGCTCATCACGGTGATTCAGAAGACCACTAGCGGAGGTGGGACAAAGCCCGATTGGTT GACGAATGATTTGAACCGGGGGAGGTTGGACCTTTTCTACTTCGTCTTGGCCGGAATGGGGTTGTTGAATTTCTTCTACTTTCTGTTCTGCGCTAGCCGG TACCGGTACAAGACCAAGATGACGATCGTGGATACGGAGGTGGGTGTCGACGGATCAAAATTGTCCTCGTTTCACGACGTAGAGATGAACTCGTGCTAA
AA sequence Show only first row Show all	>Lus10037221 pacid=23152497 polypeptide=Lus10037221 locus=Lus10037221.g ID=Lus10037221.BGIv1.0 annot-version=v1.0 MAAVVKNPCASLHYWSCCRGKDVDEQKEQQLGSPNSLSIVPSTGTPKLPEDNNRKKKPGGWRAMPYVLGNETCERLATVGLFANFQVYLTREFHLEQAKA AQLLNVWSGFTNFMPLLGAFICDAYIGRFKTIAFSVFAELLGMVTITLTAWLPHLQPPKCDIALKSGVVCLGPTSGQLGVLLTGLCLLSVGTGGIRPCSI PFGVDQFDARTEEGVKGINSFFNWYYMTFTVVILLSLTVIVYIQDSFSWVVGFGIPTVFMVVAIFLFFIGRKIYVHVKPEGSVFSGIAHVFCAAYKKRNL KLDDDSDEVAVLDGKFYDPPAKATVIHKLPLTKQFRFLNKAALIQEGEVNEHGMPSNPRSLVSIQEVEEVKCLLKVIPVWSAGIISLTAISQQGTFTVSQ AMIMDRHLGPKFEIPPGTMTVISLIVIGLWLPFYDRILVPRLRKITKYETGITLLQRVGIGIVFSILSMVVAGLVERDRREFSNTHPDSPPFSVMWLAPH LAIMGMCEAFLFIGQIEFFNKEFPENMRSIANALFSVSFAIANYLSSVLITVIQKTTSGGGTKPDWLTNDLNRGRLDLFYFVLAGMGLLNFFYFLFCASR YRYKTKMTIVDTEVGVDGSKLSSFHDVEMNSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	0	1
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	1.7	0.9179
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	6.5	0.9013
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	9.2	0.8911
AT1G50510			indigoidine synthase A family ...		Lus10022419 [exp]	10.5	0.8675
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	11.0	0.8556
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	11.5	0.8748
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	12.2	0.8709
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	13.8	0.8685
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	16.3	0.8886
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	18.2	0.9095

Compare expression of checked genes

Lus10037221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.