Plant FIBer expression Database

Lus10037222 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53350 619 / 0 CLPX CLP protease regulatory subunit X (.1)
AT1G33360 541 / 0 ATP-dependent Clp protease (.1)
AT5G49840 473 / 5e-162 ATP-dependent Clp protease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036701
[exp]
591 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1)
Lus10040561
[exp]
524 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1)
Lus10000933
[exp]
520 / 5e-179 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1)
Lus10010691
[exp]
456 / 5e-156 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G012900
[exp]
667 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1)
Potri.012G015600
[exp]
664 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1)
Potri.013G089500
[exp]
567 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1)
Potri.004G229400
[exp]
515 / 8e-179 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF07724 AAA_2 AAA domain (Cdc48 subfamily)
CL0671 AAA_lid PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence
>Lus10037222 pacid=23152270 polypeptide=Lus10037222 locus=Lus10037222.g ID=Lus10037222.BGIv1.0 annot-version=v1.0
ATGTACTCCTTGCTTCAATACCCACACTCCAGTGGTCACATATCTGCTGCCTATTATTCTACTGCCCGCCGCTCCAAATGGAGCGATTACTACACTGCCA
CACCGTACCACTTCACTTCCTTCAAGCCTGTTTCCCTCCGCGGCGAACTTGTTGATAGGAGTTTCCGTGTGTTTGAGAGCGGTAAGGGTTTCCACAGAAA
TTGGGGCGAGAAATTGACCTCTTCTTCTAGTAATACTAATGGGTCCAACTATGGGGAGCCACCGGAGGTGTGGCAGCCTCCTTCTTCAGCCCCCAGTGAT
GGGATTTCAAAAGTGAGCGAGTCGACTTTGAATGCTCTCCGGGGAGGCAGAGGTGGATCGGGTTCTTCTGGGACCAATTTGAAGGACGGTTCCTGGGGTG
GAGCCAATATGGGGAACAGTTTCCCGACACCCAAGGAAATTTGTAAAGGTCTGGATAAGTTTGTTATCGGTCAAGAAAGGGCAAAGAAGGTGCTTTCAGT
AGCAGTTTACAATCACTATAAGAGGATCTATCATGAAAATGAAACAATCCAGAGGACAGGGAAAACATTACTTGCTAAAACCATGGCACGGTTCGTCAAT
GTCCCTTTTGTTATAGCAGATGCGACTACATTGACTCAGGCTGGGTATGTTGGAGAAGACGTGGAGTCAATATTGTATAAGCTTCTTGTGGTTGCTGATT
ATAATGTTGCAGCTGCTCAGCAAGGCATCATATACATAGATGAAGTGGACAAAATCACAAAAAAGGCGGAGAGTGTTAACCTCAGTAGAGATGTGTCAGG
AGAGGGTGTTCAGCAAGCATTGCTTAAGATGCTCGAAGGAACTATTGTTAATGTTCCAGAGAAGGGAGCTAGAAAGCATCCTAGGGGTGACAATATTCAG
ATTGACACAAAGGATATACTCTTTATTTGTGGTGGTGCCTTTATCGATCTGGAAAAAACCATTTCGGAAAGGCGGCAAGACTCATCTATCGGGTTTGGTG
CTCCAGTACGTTCAAACATGAGAACGGGTGGTGTAACAAGTGCTACTGTAACATCATCCTTGTTGGAAACTGTTGAAAGTGGTGATCTTATTTCGTACGG
CTTGATACCTGAATTTGTTGGAAGATTTCCTGTTCTTGTCAGTTTGTCAGCTCTCACAGAAGACCAGCTTGTGCAGGTTCTGACTGAGCCCAAGAATGCC
CTTGAAAAACAATACAAGAAGATGTTCGAAATGAATGATGCTAAGCTACATTTTACGAAAGAAGCTGTGAGATTAATTGCTAGGAAAGCCATAACCAAAA
ACACAGGGGCTCGTGGCTTGCGGTCAATTCTAGAGAATATCTTGATGGATTCCATGTATGAGATTCCTGAAATGAGAAGAGAGGAGGATATGATAGATGC
AGTGGTAGTGGATGAAGAGGCGGTTGGAAGCGGAGCCAAGATCCTCTACGGTAAGGGCGCATTGGACCGTTACCTAGCTGAACAACAGAGATCACAAGGA
CCAGAGGTGAGTCAATTAACATTAGCCGCCTAG
AA sequence
>Lus10037222 pacid=23152270 polypeptide=Lus10037222 locus=Lus10037222.g ID=Lus10037222.BGIv1.0 annot-version=v1.0
MYSLLQYPHSSGHISAAYYSTARRSKWSDYYTATPYHFTSFKPVSLRGELVDRSFRVFESGKGFHRNWGEKLTSSSSNTNGSNYGEPPEVWQPPSSAPSD
GISKVSESTLNALRGGRGGSGSSGTNLKDGSWGGANMGNSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHENETIQRTGKTLLAKTMARFVN
VPFVIADATTLTQAGYVGEDVESILYKLLVVADYNVAAAQQGIIYIDEVDKITKKAESVNLSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQ
IDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRSNMRTGGVTSATVTSSLLETVESGDLISYGLIPEFVGRFPVLVSLSALTEDQLVQVLTEPKNA
LEKQYKKMFEMNDAKLHFTKEAVRLIARKAITKNTGARGLRSILENILMDSMYEIPEMRREEDMIDAVVVDEEAVGSGAKILYGKGALDRYLAEQQRSQG
PEVSQLTLAA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G53350 CLPX CLP protease regulatory subuni... Lus10037222
[exp]
0 1
AT1G51720 Amino acid dehydrogenase famil... Lus10006872
[exp]
2.4 0.8601
AT1G51720 Amino acid dehydrogenase famil... Lus10037612
[exp]
9.6 0.7982
AT5G52580 RabGAP/TBC domain-containing p... Lus10006646
[exp]
11.2 0.8150
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Lus10028744
[exp]
13.4 0.8497
AT2G25605 unknown protein Lus10008087
[exp]
16.7 0.8075
AT4G14290 alpha/beta-Hydrolases superfam... Lus10034017
[exp]
18.5 0.8466
AT5G10270 CDKC;1 cyclin-dependent kinase C;1 (.... Lus10026790
[exp]
23.5 0.8474
AT1G47128 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A,... Lus10018735
[exp]
24.6 0.7796
AT1G33270 Acyl transferase/acyl hydrolas... Lus10020983
[exp]
25.5 0.7810
AT3G14910 unknown protein Lus10043078
[exp]
27.9 0.8413

Lus10037222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.