Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 951 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036700 [exp] 1412 / 0 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10002849 [exp] 951 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10027814 [exp] 939 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 424 / 1e-137 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 217 / 6e-65 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034800 [exp] 1143 / 0 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.016G119300 [exp] 950 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.006G102000 [exp] 947 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10037223 pacid=23152380 polypeptide=Lus10037223 locus=Lus10037223.g ID=Lus10037223.BGIv1.0 annot-version=v1.0 ATGGCGATATCTGCCTTCTTCATCCACAGGCGCTCCGTCGACCAGGTCCTCGATCGTCTCATCGAACTCCGCCGCGTCAAGAAACCTACCACCACTGCCG CCGCCACCAGTAGCCTTCGACGCGACTCTTTGAAGGAGGAGGATGATTTGATGGAGAATCCAGAAGAGGAGGACGAGATGGAGTACGAATCGAAAGTAGT ACCCGCAGTGGAGCGGAGCATGCTGGAAGATAGCACCGAGCAGCGTGGATATAGTAGCATATCATGCTCGCTGCCTAATAAGGCGGTGATTAACACCTGG TTTGGCGACGCCGTCGATCCTTCGAGGAGAAATGAGGTGGACAATATTCCTCCTGGGCTTCAGCCTTTGCGTACAGCTCCTCCACGGGACGGGGAGAATA GATGCATTCGTTACTCTGGTTCAATGACAAGGATGGCATCTGTGGGGAGGATTGCAGGAGCAACTCCTAGATCACCTGCGGGCAATGCCTATGAGAGTTT AGGGGATTCTGAGGATGATGGAACAGAGTTTGCCAATGAAGATGATGTTCTCTCTGGAGATGGGAATATGGAGTTTTCTGCTGATTACATGAATGATCCT GATGCAAGACTCCAAAGTGGAGCTGACGACCAGAACTCCTGTCAAGAGCAGAATAATATATACGCTGGGGATGGATCCAAAGCGGGCTCAGTCCATAGTT ATGGAAAAGAAATGGAAACAATTATAGCTCACCCGGTTGAGAATGATTCATGCATTGCGAGTTTACTTCGGAGGACTATTGTACACGACTCCATAAACGC TGAAGAAGAAGAGGTGAGGAAGTTGCTCCGCGAGTGCCTGGATCTACGCAGTAAGTATGTCTATAAGGAGAATGTTGCTCCTTGGACGAAGGTAGCAGAG AAAGTATCTGATACCACACAGGCAAAGTCCGATCCATTCCATTTTGAGCCTGTTTCAGCAACCGAGCATCATTTCAGAATGGAAGATGGAGTAGTACGTG TTTATGCCACTAAAAACGATAATGTAGAGCTTTTTCCGGTTGCCAGTGCGACAACTTTCTTTACTGATATGCATCACATCATGAAAGTGATGTCTGTTGG AAATGTTCGAACTACATGCTATCACAGACTACGATTCCTTGAGGAGAAGTTCCGCCTTCATCTGTTGGTAAATGCAGACAGGGAATTCTTGGCTCAGAAG GGGGCACCTCACCGTGACTTCTATAATATCAGAAAAGTTGACACACACGTGCATCATTCTGCTTGCATGAACCAGAAGCATTTGCTCCGCTTCATCAAGT CTAAGCTAAAAAAAGAACCAGATGAGGTTGTTATTTTCAGAGACGGATTGTATATGACACTGAAGGAAGTTTTTGAAAGTTTGGACTTGACAGGATACGA CTTGAATGTTGATTTGTTGGACGTCCATGCCGATAAGACGACCTTTCACCGATTTGATAAATTCAATCTTAAATATAATCCTTGTGGACAGAGCAGACTC AGAGAGATTTTCTTAAAGCAGGATAATCTCATCCAAGGGCGATTCTTAGCAGAAGTAACTAAAGAAGTTCTAGCTGATCTTGAAGCAAGCAAATACCAGA TGGCTGAGTACCGGATTTCTATTTACGGGAGGAAACAAAGTGAATGGGATCAGCTAGCTAGTTGGTTTGTCAATAATCAGATTTACAGTGAGAATGCTGT TTGGCTAATCCAGCTACCACGGCTATACAACGTGTACAAGGAGATGGGAATAGTTAACTCTTTCCAGAATATTCTTGACAATGTCTTCCTTCCATTATTT GAAGTCACTGTGGATCCCAACTCCCATCCTCAACTCCATATGTTTCTAATGCAGGTCGTGGGATTTGATCTTGTTGATGACGAGAGTAAACCAGAAAGGC GTCCAACAAAGCATATGCCAAAACCAGCTGAATGGACGAATAAGTTCAATCCAGCCTACTCTTATTACACCTACTACACCTATGCTAACTTGTATACCCT TAATAAGGCTGGCGATATCGATCATTTGGCTGCTGCGTTCCTTCTGTGCCAGAACATCTCTCATGGCATCAACCTGCGAAAATCCCCTGCTTTGCAGTAT TTGTATTACCTTGCTCAGGTTGGCTTAGCAATGTCGCCACTGAGCAACAATTCCCTGTTTCTGGATTATCACCGCAATCCATTCCCAATATTCTTCCAGC GTGGCATGAACATTTCGCTCTCCACCGACGATCCTCTGCAGATTCAGTTAACCAAAGAACCTCTGGTTGAAGAGTACAGCGTTGCAGCAAAGGTGTGGAA GCTAAGTTCATGCGATCTCTGCGAGATAGCGAGGAACTCCGTCTACCAATCTGGATTCTCCCACGCAGCAAAGGAGCATTGGCTTGGAAACGACTATTAC TTGCGAGGACCGGAAGGAAACAACATTCACAAGACGAACGTGCCCAATATTAGAATCACCTTCCGACACGAGACATGGAAGGAAGAGATGCAGTACGTAT ACTCAGGAAGATGCAGGTTCCCTACCGAAGTAGAGCTTTGA
AA sequence Show only first row Show all	>Lus10037223 pacid=23152380 polypeptide=Lus10037223 locus=Lus10037223.g ID=Lus10037223.BGIv1.0 annot-version=v1.0 MAISAFFIHRRSVDQVLDRLIELRRVKKPTTTAAATSSLRRDSLKEEDDLMENPEEEDEMEYESKVVPAVERSMLEDSTEQRGYSSISCSLPNKAVINTW FGDAVDPSRRNEVDNIPPGLQPLRTAPPRDGENRCIRYSGSMTRMASVGRIAGATPRSPAGNAYESLGDSEDDGTEFANEDDVLSGDGNMEFSADYMNDP DARLQSGADDQNSCQEQNNIYAGDGSKAGSVHSYGKEMETIIAHPVENDSCIASLLRRTIVHDSINAEEEEVRKLLRECLDLRSKYVYKENVAPWTKVAE KVSDTTQAKSDPFHFEPVSATEHHFRMEDGVVRVYATKNDNVELFPVASATTFFTDMHHIMKVMSVGNVRTTCYHRLRFLEEKFRLHLLVNADREFLAQK GAPHRDFYNIRKVDTHVHHSACMNQKHLLRFIKSKLKKEPDEVVIFRDGLYMTLKEVFESLDLTGYDLNVDLLDVHADKTTFHRFDKFNLKYNPCGQSRL REIFLKQDNLIQGRFLAEVTKEVLADLEASKYQMAEYRISIYGRKQSEWDQLASWFVNNQIYSENAVWLIQLPRLYNVYKEMGIVNSFQNILDNVFLPLF EVTVDPNSHPQLHMFLMQVVGFDLVDDESKPERRPTKHMPKPAEWTNKFNPAYSYYTYYTYANLYTLNKAGDIDHLAAAFLLCQNISHGINLRKSPALQY LYYLAQVGLAMSPLSNNSLFLDYHRNPFPIFFQRGMNISLSTDDPLQIQLTKEPLVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHAAKEHWLGNDYY LRGPEGNNIHKTNVPNIRITFRHETWKEEMQYVYSGRCRFPTEVEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	0	1
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	2.6	0.8928
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	2.8	0.8737
AT4G32910			unknown protein		Lus10011625 [exp]	4.7	0.8670
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	4.9	0.8665
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	7.5	0.8590
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	8.4	0.8908
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	8.8	0.7873
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	11.5	0.8256
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	11.7	0.8752
AT1G30240			unknown protein		Lus10026071 [exp]	12.8	0.8774

Compare expression of checked genes

Lus10037223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.