Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27090 337 / 2e-112 glycine-rich protein (.1) AT3G24690 88 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036699 [exp] 513 / 0 AT1G27090 351 / 8e-120 glycine-rich protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034900 [exp] 381 / 8e-130 AT1G27090 371 / 5e-126 glycine-rich protein (.1) Potri.008G194200 [exp] 360 / 2e-121 AT1G27090 359 / 3e-121 glycine-rich protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037224 pacid=23152523 polypeptide=Lus10037224 locus=Lus10037224.g ID=Lus10037224.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTCCTGTCCCCGAATCCGCTGACGGCCCAGTCCTCAACCTAATCAACAAGCGACTTCGCGCCCTCCGCAAGAAACACAACAGAATCATCC AGATGGAAGAATCCCTCGCCCAAGGGAAGCCGCTCAACAAGGAGCAAGAAGAGGTGCTTCGCTCTAAGCCTTCCGTCACCGCCTCAATCGAGGAGCTCGA GAAGCTCCGCCAGCCTCTATCCGTCGCCGTCTCCGAGGAAATCGACATCGCCATAAAGAACATCAAGACTCCGGCGCCGGCGGAGAAGAACGGCGATGTG GAGCAGGTGGAGAAGGTGAAGGAAGGGAGTGAGCCTAAGTCTGATGATGCTATCGAGTCGATGGTCGGGGATCTCCTCAACTTGCTCTACTTTGGAGCTC TGTTCGACGTGAAGTCGCAGAACGATTTCACAGCCACGATGTTGACCAGGACTCACGAGAGAGGATGCTGCTTGACTTACGATTACGTCACCGACGATGC TACCGATCTGCTGAGTGAAAATGATTTGGACTTGATTTCTTCCCTCAGTGGATTGCTTGTTTCTCGCCCTCTGGATTCCAGTTTGTCGCATAAGAATGCT CTCCAGCACTGCGTTGAGCATGCTAAGCTGTGGCTGGCTAATTCTGATAACTCTTTGAATGACAATGCCAGGGTTTCCTATGCAGGATTGAGGGAAAGGC TTAACAAGATTATGGCTTCTGACTATTTTACCACGACGCCGGAGAGAAAAGCACCAGTGGAGGTTGGAAATTTTGGTTCTTTCCAAGTTCCGGTTCAGGT AGAAGGCCATACTGTAGACTACCAGCAACAACAGCATGAGGAAGCAACTAATGCCCAAGGACAAGAATTCAGTGACGATCAGTCGAGTCGTGCTGAGGAA CAAGTTCACAAGGATGAACCCGAAGTGGAACACCCTGGAGAAACTGACCCGAGTCATCAGGAAGAAACGAAGCCTTCACCGCAACTGGAGCATAACCAAC AAGATGCAGCAGACTCTACAGAGCAGCAACAGTATGGCAACCGGAGGAATTACCCGCACCAAAGAGGTGGTGGTCGTGGAAGTAGTGGCGGCGGTCGTCG GGGTGGTTATCAAAACGGCCGTGGAGGACGAGGCAGTGGCAGGGGAGGTGGCAATGGCGGTGGCCAATACAATGACCAACCTGCGAACTATTACCCTAGG AGTGGCGGCGGTCAATACTACAACAACCGAGGAAGAGCTGGCGGGAGAGGTGGTAATAACAGCTACCATGCCTCTGCGGGTAGCGGCAATGGCAACGAGA CGGGTGTGTCCTCGTGA
AA sequence Show only first row Show all	>Lus10037224 pacid=23152523 polypeptide=Lus10037224 locus=Lus10037224.g ID=Lus10037224.BGIv1.0 annot-version=v1.0 MASTPVPESADGPVLNLINKRLRALRKKHNRIIQMEESLAQGKPLNKEQEEVLRSKPSVTASIEELEKLRQPLSVAVSEEIDIAIKNIKTPAPAEKNGDV EQVEKVKEGSEPKSDDAIESMVGDLLNLLYFGALFDVKSQNDFTATMLTRTHERGCCLTYDYVTDDATDLLSENDLDLISSLSGLLVSRPLDSSLSHKNA LQHCVEHAKLWLANSDNSLNDNARVSYAGLRERLNKIMASDYFTTTPERKAPVEVGNFGSFQVPVQVEGHTVDYQQQQHEEATNAQGQEFSDDQSSRAEE QVHKDEPEVEHPGETDPSHQEETKPSPQLEHNQQDAADSTEQQQYGNRRNYPHQRGGGRGSSGGGRRGGYQNGRGGRGSGRGGGNGGGQYNDQPANYYPR SGGGQYYNNRGRAGGRGGNNSYHASAGSGNGNETGVSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	0	1
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	1.0	0.9706
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	1.7	0.9617
AT5G20600			unknown protein		Lus10027609 [exp]	2.0	0.9644
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	2.0	0.9606
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	3.2	0.9543
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	3.7	0.9598
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	4.0	0.9504
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10019147 [exp]	4.9	0.9597
AT5G01160			RING/U-box superfamily protein...		Lus10021125 [exp]	4.9	0.9461
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	5.3	0.9508

Compare expression of checked genes

Lus10037224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.