Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 211 / 5e-64 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 182 / 3e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 162 / 3e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 153 / 9e-43 Leucine-rich repeat protein kinase family protein (.1) AT3G49750 127 / 5e-35 AtRLP44 receptor like protein 44 (.1) AT5G65830 119 / 5e-32 ATRLP57 receptor like protein 57 (.1) AT2G23950 93 / 2e-21 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 92 / 1e-20 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 91 / 2e-20 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G13810 89 / 8e-20 AtRLP47 receptor like protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036697 [exp] 410 / 3e-146 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 333 / 3e-111 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 307 / 6e-101 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10034278 [exp] 211 / 4e-67 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10036704 [exp] 187 / 2e-60 AT5G48380 124 / 4e-34 BAK1-interacting receptor-like kinase 1 (.1) Lus10030812 [exp] 147 / 6e-43 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10030811 [exp] 153 / 2e-42 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011561 [exp] 117 / 3e-31 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10019277 [exp] 115 / 1e-30 AT3G49750 399 / 8e-142 receptor like protein 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240000 [exp] 258 / 6e-82 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 245 / 4e-77 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 242 / 2e-76 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 240 / 2e-75 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 226 / 5e-70 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003550 [exp] 211 / 3e-69 AT5G48380 180 / 5e-54 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 224 / 4e-69 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 193 / 2e-57 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 186 / 5e-55 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 185 / 1e-54 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037226 pacid=23152341 polypeptide=Lus10037226 locus=Lus10037226.g ID=Lus10037226.BGIv1.0 annot-version=v1.0 ATGATCAACAAAATACTACTACTCTCCATACATATAGTGTTTGTGAGTAGTGGGACGTTGAGCCAGGGTTTTTACTCCGACATTGATTGCCTGAGGTCCA TAAAAGATTCCCTTGAAGACCCTTTCGGCCACCTCAAATCTACGTGGAACTTCAACAACAACACTGAAGGCTTCATCTGCAAGTTCACCGGAGTCGATTG TTGGCATCCTGACGAGAACAAGGTGATGAACATTCGCCTCGCTCACATGGGTCTCAAAGGCCAGTTCCCTGTTGGCCTCAAGAACTGCACCGGAATCACA GGCCTGGATCTTTCAAACAACGAGCTGTCAGGACCAATTCCTGAAAAAATATGCTATATTGTAGGTTGGGTAACATCTCTGGACCTGTCTTCCAACAGGT TTTCGGGGCCAATTCCAGCAAATTTTGCCAACTGTAGCTATTTGAATGTCCTGAATCTTGACCATAATCAATTCAGTGGTTCGATTCCTGGAGAGATGGC CAATCTCCATCGACTCAAGACCTTCAACGTTGCGAATAACCGTCTGGTTGGGCCTGTCCCAAGTTTCAGGAATCCCACAATCCCTCCAGAAAACTATGCA AACAATCCGGGACTTTGTGGGCCGCCTTTGGATCGCTGCGTTGGTGGGTCAGGTGGTGCATGGCGGACCGATTCAGGTAGTTTCGTAGCGGCACACATTG CTGGGGGAACTGTAGTCGCTGTAGGTTTCTGTGTTGTTGTTCTGCTCTATTTCCTCAGGAAAAGAGACCAAAGAAATGGAGCAACAAATGTTTGA
AA sequence Show only first row Show all	>Lus10037226 pacid=23152341 polypeptide=Lus10037226 locus=Lus10037226.g ID=Lus10037226.BGIv1.0 annot-version=v1.0 MINKILLLSIHIVFVSSGTLSQGFYSDIDCLRSIKDSLEDPFGHLKSTWNFNNNTEGFICKFTGVDCWHPDENKVMNIRLAHMGLKGQFPVGLKNCTGIT GLDLSNNELSGPIPEKICYIVGWVTSLDLSSNRFSGPIPANFANCSYLNVLNLDHNQFSGSIPGEMANLHRLKTFNVANNRLVGPVPSFRNPTIPPENYA NNPGLCGPPLDRCVGGSGGAWRTDSGSFVAAHIAGGTVVAVGFCVVVLLYFLRKRDQRNGATNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	0	1
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	3.0	0.9111
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	3.0	0.8865
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	3.7	0.8612
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	5.7	0.8679
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	5.9	0.8660
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020491 [exp]	6.0	0.8654
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	6.8	0.8941
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020492 [exp]	8.0	0.8500
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	9.2	0.7919
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	10.8	0.7872

Compare expression of checked genes

Lus10037226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.