Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59720 719 / 0 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 442 / 5e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G08070 428 / 1e-142 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 422 / 8e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 422 / 8e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 418 / 5e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 418 / 6e-140 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31920 410 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 410 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 410 / 2e-137 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033026 [exp] 446 / 9e-150 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 424 / 3e-142 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 420 / 4e-141 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 417 / 1e-138 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 413 / 4e-138 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 411 / 3e-137 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 402 / 2e-134 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 400 / 8e-133 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001617 [exp] 394 / 1e-130 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092400 [exp] 734 / 0 AT1G59720 810 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 454 / 4e-153 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 440 / 1e-148 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 438 / 1e-148 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 424 / 4e-143 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 418 / 3e-142 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G031600 [exp] 420 / 2e-139 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 417 / 6e-139 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 414 / 6e-139 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 412 / 9e-138 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037229 pacid=23152576 polypeptide=Lus10037229 locus=Lus10037229.g ID=Lus10037229.BGIv1.0 annot-version=v1.0 ATGTGGAACACTCTAATCAGAGCCTATGCGCGGAGCAACGACCGTAAAGACCATGCATTCATGGTGTTCCAGAAAATGCTGCTGAGAGGAACGGAGGTAA CTCCGGATAACCATACGTTCCCGTTCGTTTTGAAGGCGTGCTCGTATCTGTTCGCCTTGTCGGAAGGGAAACAAGCTCACGGACAGCTTGTGAAGCGTGG GTTGGAATCGGATCCTTATATAGGTAACAGCTTGATTCATTTCTACGGTTCTTGTTGCTACTTGGAAATGGCTAGGAAGGTGTTCGATAAAATGCATGAA AGAACCGTGGTCTCGTGGAACGCTATGATTGATAGTTTTGTCAGGTTGGGTGAGTACCAAACTGCTTTGGAGTTCTTTGTTCAGCTCCAACAGGGATCGT TTGAGCCGGATGGATATGCGATTCAAAGCGTGTTGAATGCTTGTGGTGGGTTGAGTGCTTTGTCTTTGGGAATGTGGGTTCATGCTTATATATTGAGGAG CTCTGGTTTGGATTTAGCTAGAGATGTTTTGGTAAACAATTCTTTGGTTGACATGTACTGCAAATGCGGGGCGTTGGAAATGGCGATGCAAGTTTTCGAG AGGATGGAGAATCGTGATCTGGCTTCGTGGAACTCCATGATTCTAGGATTCGCTATGCACGGTAAGAGTGAGCTAGCCTTGGAATATTTCGATACCATGG CGAACAAAGAGAGGATTCTTCCGAATTCGGTCACGTTTGTGGGTGTTCTGAGCGCTTGTAATGATGGGAATGATGGGAGGAAGTATTTCGATTTGATGGT TAACGAGTACGAAATCGAACCTCGGTTAGAACACTACGGTTGCCTAGTTGACATTCTTGCTCGCGCTGGCTTGATCGACGAAGCCTTGGATTTGATTTCA ACCATGGACATGAAACCTGATGCCGTTATATGGAGGAGTCTTCTTGACGCTTGCTGTAGGAATAATGCGAGCGTCAAGCTAAGCGAAGAGATGGCTTCGC GGATACTCCTCGAGTCGGGGGGAGGAGGAAGCGATTGTAGCGGCGTTTACGTACTGTTGTCGAAAGTCTATATATCAGCTAGTAGATGGAACGATGTCGG GGTTATCAGGAAACTGATGGCTGATAAAGGAATAGCAAAACAGCCCGGCTGCAGTTTGATCGAGATCGACGGGGTCACGCACGAATTATTCGCTGGAGAC ACATCTCATCCTCGAACGAAACACATTTACGAAGCTCTCAAAGTCATTGAAGAGAGACTAGAATCTGCAGGATACACTCCTGACAGTTCGCAAGCAACCG AGCAGGATGATGATGGCAAACAGAGCTCGTTAAGATTGCACAGCGAGCGGCTCGCCATTGCTTTGGGGCTCATAAGCATGAAACCGGGAACGCCAATTCG CATCTTCAAGAACCTACGAGTCTGCAACGACTGCCACCGGGTGACTAAACTGGTATCGAAAATCTTCGACGTGGAGATCATAGTCCGGGACAGGGCTCGG TTCCATCACTTCAAGGACGGGTCATGTTCGTGTATGGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10037229 pacid=23152576 polypeptide=Lus10037229 locus=Lus10037229.g ID=Lus10037229.BGIv1.0 annot-version=v1.0 MWNTLIRAYARSNDRKDHAFMVFQKMLLRGTEVTPDNHTFPFVLKACSYLFALSEGKQAHGQLVKRGLESDPYIGNSLIHFYGSCCYLEMARKVFDKMHE RTVVSWNAMIDSFVRLGEYQTALEFFVQLQQGSFEPDGYAIQSVLNACGGLSALSLGMWVHAYILRSSGLDLARDVLVNNSLVDMYCKCGALEMAMQVFE RMENRDLASWNSMILGFAMHGKSELALEYFDTMANKERILPNSVTFVGVLSACNDGNDGRKYFDLMVNEYEIEPRLEHYGCLVDILARAGLIDEALDLIS TMDMKPDAVIWRSLLDACCRNNASVKLSEEMASRILLESGGGGSDCSGVYVLLSKVYISASRWNDVGVIRKLMADKGIAKQPGCSLIEIDGVTHELFAGD TSHPRTKHIYEALKVIEERLESAGYTPDSSQATEQDDDGKQSSLRLHSERLAIALGLISMKPGTPIRIFKNLRVCNDCHRVTKLVSKIFDVEIIVRDRAR FHHFKDGSCSCMDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	0	1
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	1.7	0.8872
AT1G31710			Copper amine oxidase family pr...		Lus10004912 [exp]	2.6	0.8334
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	3.5	0.8476
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	3.7	0.8478
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	7.7	0.8351
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	8.4	0.8304
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	9.6	0.8386
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	10.2	0.8324
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	13.4	0.8287
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	14.1	0.8294

Compare expression of checked genes

Lus10037229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.