Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59710 181 / 5e-54 Protein of unknown function (DUF569) (.1) AT1G69890 179 / 2e-53 Protein of unknown function (DUF569) (.1) AT1G27100 178 / 8e-51 Actin cross-linking protein (.1) AT3G28630 166 / 5e-48 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT3G01311 160 / 4e-46 Protein of unknown function (DUF569) (.1) AT1G69900 145 / 2e-39 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036694 [exp] 250 / 1e-80 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10030804 [exp] 228 / 6e-72 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10013281 [exp] 204 / 5e-64 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10015346 [exp] 172 / 1e-49 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10001124 [exp] 171 / 2e-49 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10036693 [exp] 132 / 2e-36 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 97 / 3e-22 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036692 [exp] 40 / 0.0002 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035100 [exp] 228 / 1e-69 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 212 / 2e-63 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) Potri.017G075900 [exp] 182 / 2e-52 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1) Potri.004G130200 [exp] 173 / 6e-49 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10037230 pacid=23152459 polypeptide=Lus10037230 locus=Lus10037230.g ID=Lus10037230.BGIv1.0 annot-version=v1.0 ATGAACTTTCCCTTTCTTTTCTTCCTCGGCCAGAAAAACACTCTGCATCTGGATCTCTCTGTTTCTAATCCTTCCTCTGTTTTTTCACAGACGAACAGCA CCGGCAGCTTCAACCAGTTCCGCTCGGCGATGGACTTCTTCCACAAGGCCAAAGCCGTCCGCCTCCGCAGCCACCACGAAAAGTACCTCCACGCCGACGA AGACGAGGAATCCGTCCTCCAGGACCGGAATGGGTCTGCCAAAAACGCCAAATGGACCGTCGAGCCCGTACCCGGATCTGAATCGGTAATCCGACTCAAG TCCTGCTACTCCAAGTACCTAACGGCTTCCGATCATCATTTCCTGTTGGGGATGACCGGCCGGAAGGTCCTCCAGACTTCCCCTCGCCGTCTCGACTCCT CCGTCGAGTGGGAGCCCGTCCGGGGAGGCGCCCAGATCAAGCTCCGAACCCGGTACGGAAACTTCCTCAGAGCTAACGGCGGGGTGGGGGCCCGGCGGAA GACACGCACCTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNGGGGCGACCCCCGAGTAAAGTCCCGACCCGGACCCGAAACCTTCCACAGACCTAACGGCGGGTTGCCGCCGTGGAGAAACTCCGTCACCCACGACA TCCCTCACCGGACCGCCACCCAGGACTGGATCCTCTGGGACATCGACGTCGTCGAGATTCAGGTGCTTTCTCCGGCGGCCAAGCCCTCCCCGCCGCCGCT TCCTCACTCGGATTCTCTCGGGTCAGTTTCTTCCGATTCCGTCCCACCCAGCAATGTTTCGAGATTAGAGTCGAATGGTGGGTCGCCGCCGAAGATGGCT GAGGGGAGGACGATATACTACCACGTGGCGGAGGAGGGATGGGAGGATGATGACGTGGCGGAAGGATATTCGATGAACTTCAAAGGGAATGGAGTTGAAG GGTTGACTGAGAAGTTGAAAGAAGTGACTGGTTTTTCTGAAGAAGGTATAGTTGTGTGTTCCAAGAGTCCTTTGAATGGCAAGCTTTACCCTCTGAGATT GCAGCTCCCTCCTAACAACTCCGACATGCATGTCGTCGTTGTCCCTTCATCTTCCGAAGAGTACTGGTTATACCAGAAAGCATTGAATGTACAAGAATCA AGAGAAGACTGA
AA sequence Show only first row Show all	>Lus10037230 pacid=23152459 polypeptide=Lus10037230 locus=Lus10037230.g ID=Lus10037230.BGIv1.0 annot-version=v1.0 MNFPFLFFLGQKNTLHLDLSVSNPSSVFSQTNSTGSFNQFRSAMDFFHKAKAVRLRSHHEKYLHADEDEESVLQDRNGSAKNAKWTVEPVPGSESVIRLK SCYSKYLTASDHHFLLGMTGRKVLQTSPRRLDSSVEWEPVRGGAQIKLRTRYGNFLRANGGVGARRKTRTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXGDPRVKSRPGPETFHRPNGGLPPWRNSVTHDIPHRTATQDWILWDIDVVEIQVLSPAAKPSPPPLPHSDSLGSVSSDSVPPSNVSRLESNGGSPPKMA EGRTIYYHVAEEGWEDDDVAEGYSMNFKGNGVEGLTEKLKEVTGFSEEGIVVCSKSPLNGKLYPLRLQLPPNNSDMHVVVVPSSSEEYWLYQKALNVQES RED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	0	1
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	1.4	0.9274
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	3.9	0.9150
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	4.0	0.9249
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	9.2	0.8847
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10014239 [exp]	10.8	0.9038
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	10.9	0.8978
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	11.3	0.8808
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10041352 [exp]	14.4	0.8384
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	14.7	0.9035
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	17.0	0.8938

Compare expression of checked genes

Lus10037230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.