Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27100 183 / 8e-54 Actin cross-linking protein (.1) AT1G59710 126 / 4e-34 Protein of unknown function (DUF569) (.1) AT3G28630 126 / 7e-34 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT3G01311 122 / 6e-33 Protein of unknown function (DUF569) (.1) AT1G69900 120 / 5e-31 Actin cross-linking protein (.1) AT1G69890 114 / 7e-30 Protein of unknown function (DUF569) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036693 [exp] 182 / 6e-57 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10030804 [exp] 130 / 1e-35 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 129 / 4e-35 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10015346 [exp] 121 / 1e-31 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10001124 [exp] 121 / 1e-31 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10036692 [exp] 98 / 9e-26 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1) Lus10037230 [exp] 97 / 2e-22 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10013281 [exp] 56 / 7e-09 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035100 [exp] 222 / 2e-68 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 194 / 4e-58 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) Potri.004G130200 [exp] 182 / 9e-54 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.017G075900 [exp] 169 / 8e-49 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10037231 pacid=23152608 polypeptide=Lus10037231 locus=Lus10037231.g ID=Lus10037231.BGIv1.0 annot-version=v1.0 ATGGAGTTCTTCACGAAGACGATGGCGGTGAAGCTCCGGAGCCACCTGGACAAGTACCTCATAGCCGAGCCGGACTTCAAGACCGTCCGACAAACCGGGA CCAACGCCTCCTCCCGTCGTGCCACGTGGCTCGTGGAAGTCATCCCCGAGAGAAACGGCGTCGTCCGCCTGCGCAGCTGCCACGGCACGTATCTGACGGC ATCCAACGCTCGGCTCCTCCTCTGCGTGATGGGCAGCAAGGTTGTCCAAACGGTGCCCGATGGTCGGAATTGTTCCGATGAAGAGAATTCCAGGATGGAG TGGCGGCCGGTGAGGGATGGGTTTCAGGTAAGGCTGAAAAACAGCTGGTGCGGACGCTGGTTGGCGGAAATACACCTAGGACCGGCGGCGGGTACCCCGC CGTGGAGGAACTCGGTCACCAACGACAAGCGCAATTTGAGTCCGACGCGTGATTGGGTGCTTTGGACGGTGGAGGCTGTGGTAGGAGACATGGATTATTC TGTGAAGGAGTTTTTGTCTTCGGTTTCGAACCTTTCCTCACTCTCAGTTGATCTGATCGAGGCAGTGCTGTCGTCGGAAGACTCGGAAGGATCTCCGGAG GAGAGTCTGAGGGTGGCGGCGGTGAAGTCATTGCCGCGGAGCTGGGCACCTAGATCTTTGGAGAAGGCGGTCAAGCTCCGAAGCCACTTAGACAAGTACC TCCTCGCCGACGACGACAGGCTCACCGTCCGCCAAACCCGCAACTCCGCCTCCTCCCGCCGCGCCACCTGGTTCGTCGAGTTCCTCCCGGAAAAAACCGA CGCCGTCCGCCTCCGCAGCTGCTTCGGCACCTATCTCACCGCCTCCGACCGTGTTCGCCCGGGTCGCCGTCGTCGGTTGTGCCGGCGGCAAGGAAGGCGT CGAGGTTGA
AA sequence Show only first row Show all	>Lus10037231 pacid=23152608 polypeptide=Lus10037231 locus=Lus10037231.g ID=Lus10037231.BGIv1.0 annot-version=v1.0 MEFFTKTMAVKLRSHLDKYLIAEPDFKTVRQTGTNASSRRATWLVEVIPERNGVVRLRSCHGTYLTASNARLLLCVMGSKVVQTVPDGRNCSDEENSRME WRPVRDGFQVRLKNSWCGRWLAEIHLGPAAGTPPWRNSVTNDKRNLSPTRDWVLWTVEAVVGDMDYSVKEFLSSVSNLSSLSVDLIEAVLSSEDSEGSPE ESLRVAAVKSLPRSWAPRSLEKAVKLRSHLDKYLLADDDRLTVRQTRNSASSRRATWFVEFLPEKTDAVRLRSCFGTYLTASDRVRPGRRRRLCRRQGRR RG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27100			Actin cross-linking protein (....		Lus10037231 [exp]	0	1
AT1G27100			Actin cross-linking protein (....		Lus10036693 [exp]	1.0	0.9133
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	16.7	0.8735
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	19.8	0.8835
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	25.5	0.8801
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	26.0	0.8548
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	26.9	0.8709
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	31.0	0.8692
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	35.1	0.8311
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	35.1	0.8680
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	39.7	0.8593

Compare expression of checked genes

Lus10037231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.