Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58003 445 / 4e-154 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G33540 222 / 3e-63 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT2G04930 165 / 3e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 160 / 5e-45 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 155 / 3e-43 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 149 / 4e-41 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 144 / 8e-39 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 139 / 2e-37 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G23470 123 / 1e-31 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 121 / 1e-31 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036689 [exp] 749 / 0 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10036277 [exp] 719 / 0 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10021854 [exp] 246 / 4e-79 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10036271 [exp] 219 / 4e-62 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10015787 [exp] 45 / 0.0001 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108300 [exp] 536 / 0 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.003G164300 [exp] 219 / 6e-62 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.001G065600 [exp] 217 / 2e-61 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.003G173700 [exp] 50 / 3e-06 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G049400 [exp] 46 / 4e-05 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.011G078300 [exp] 46 / 5e-05 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 42 / 0.0006 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 42 / 0.0008 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10037233 pacid=23152329 polypeptide=Lus10037233 locus=Lus10037233.g ID=Lus10037233.BGIv1.0 annot-version=v1.0 ATGAATTCGTCTAGTAGTGACGATTTTTCTGCTTTCCTCGATGGATATCTTGACTCCAAATCTTCGGATGATGGAGATGATGATGGAGAAGTAAAAAATG GTTCTGCTTCTAGCTTTTCTGCCTCCTCGTCCAGTGAGGAAGAATCTGAAGATGAAGAGGATAATGAACCTGTAAGAAAGAGAACCAAGATTTCTGAGTT GGAGATACTGGAAAATGGAGATAGTCGCAAGGGCTCAACTTCCCAGGCAATAGTAGAGCAGAAATTAGGCACTTTCATGGTCATATCTTCTGACTTCATT TCAGAAGCATCATCAAGTTCAACTATCAGTAAGAACGAGTGTGCACATCGAGGATCTTTTGCTAATATGTGTATAGATTGTGGGAAAATTCTTGGTGAGG AATCTGGCTTATCATTATCATATATACACAAGCAATTGAGACTTGGGAATGATGAAATAACAAGACGCCGGGATATCGAAACGAAGAGCTTGTTGCGCCA AAAAAAGCTATACCTCATACTTGATCTGGATCATACCTTGCTAAATTCTACTCTTCTTGGGCATATGGTGCCAGAAGAGGAGTATCTGAATGATCGACTG GATTCCATTCAAGATACTCAAAATGGAAGCTTATTCAAGTTGCACTCCATGCATATGATGACCAAGCTGAGGCCCTATGTGCGTTCATTTCTGAAGGATG CTAGTAAAATGTTTGATATGTATATATATACCATGGGCGACAAAGCTTATGCACTGGAAATGGCCAAATTGCTTGATCCGGGAAAAGAATACTTCGATGC GAAGGTTATTTCTCGTGATGATGGAAGTCAGAGACATCAGAAGGGTCTTGATGTGGTGCTAGGAGAAGAGAGTGCGGTTCTCATCCTCGACGATACTGAA AATGTATGGCCGAGTCATAGGGACAACTTGATATTGATGGAAAGATGCCATTTCTTTGCTTCAAGCTGCCGTCAATTTGGATTCGAATGCAAATCTCTCT CACAACATAAAAGCGATGAGAGTGAACCCGAAGGAGCACTTGCAACAGTTCTGAAGGTCCTGCAAAAAGTTCACTATATCTTCTTCCACGAACTCGAAGA CCAAGCTGGTTGCAGAGATGTGAGGCAGGTTCTGAAAACGGTTGGTAGAGACGTGCTGAAGGGGTGCAGGATTGTGTTCAGCAGGGTTTTCCCAACCCAG TTCCCAGCAGAGAGTCACCATCTGTGGAAAATGGCCGTAAATCTGGGAGCGACATGTACAATAGAAGTCGATCCATTGGTGACCCATGTCGTTGCCATGG ATCCTGGTACGAAGAAATCTCGTTGGGCACTAGAGAACCACAAGTTCCTAGTCCTCCCACGGTGGATAGAGGCAGCAAACTATCAGTGGCAGAGGGTGCC GGAGGTCAATTTCGCAGTGAACCTAAGTAGTAAGGAAAAGTAG
AA sequence Show only first row Show all	>Lus10037233 pacid=23152329 polypeptide=Lus10037233 locus=Lus10037233.g ID=Lus10037233.BGIv1.0 annot-version=v1.0 MNSSSSDDFSAFLDGYLDSKSSDDGDDDGEVKNGSASSFSASSSSEEESEDEEDNEPVRKRTKISELEILENGDSRKGSTSQAIVEQKLGTFMVISSDFI SEASSSSTISKNECAHRGSFANMCIDCGKILGEESGLSLSYIHKQLRLGNDEITRRRDIETKSLLRQKKLYLILDLDHTLLNSTLLGHMVPEEEYLNDRL DSIQDTQNGSLFKLHSMHMMTKLRPYVRSFLKDASKMFDMYIYTMGDKAYALEMAKLLDPGKEYFDAKVISRDDGSQRHQKGLDVVLGEESAVLILDDTE NVWPSHRDNLILMERCHFFASSCRQFGFECKSLSQHKSDESEPEGALATVLKVLQKVHYIFFHELEDQAGCRDVRQVLKTVGRDVLKGCRIVFSRVFPTQ FPAESHHLWKMAVNLGATCTIEVDPLVTHVVAMDPGTKKSRWALENHKFLVLPRWIEAANYQWQRVPEVNFAVNLSSKEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	0	1
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	1.4	0.8327
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	1.7	0.7608
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	5.0	0.7035
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	5.5	0.7881
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10026557 [exp]	12.2	0.6584
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	13.9	0.7340
AT3G08880			unknown protein		Lus10022668 [exp]	14.2	0.7364
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	16.0	0.7424
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	19.2	0.6799
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	20.6	0.7328

Compare expression of checked genes

Lus10037233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.