Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10370 276 / 2e-94 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G10360 259 / 1e-87 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1) AT1G59700 236 / 1e-78 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT1G27130 232 / 3e-77 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G69930 228 / 9e-76 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT1G27140 222 / 5e-73 GST13, ATGSTU14 GLUTATHIONE S-TRANSFERASE 13, glutathione S-transferase tau 14 (.1) AT1G59670 215 / 2e-70 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT1G69920 214 / 9e-70 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT2G29480 162 / 6e-50 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT3G09270 158 / 3e-48 ATGSTU8 glutathione S-transferase TAU 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036688 [exp] 416 / 9e-150 AT1G10370 281 / 1e-96 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030805 [exp] 329 / 2e-115 AT1G10370 308 / 4e-107 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030806 [exp] 305 / 7e-106 AT1G10370 290 / 4e-100 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10013282 [exp] 241 / 7e-81 AT1G10370 229 / 2e-76 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10029518 [exp] 170 / 3e-54 AT1G69930 96 / 3e-25 glutathione S-transferase TAU 11 (.1) Lus10009746 [exp] 169 / 4e-54 AT1G10370 96 / 1e-25 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10016471 [exp] 167 / 2e-51 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 164 / 1e-50 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10016469 [exp] 164 / 3e-50 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G032800 [exp] 302 / 7e-105 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G035500 [exp] 298 / 5e-103 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G060900 [exp] 171 / 2e-53 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175100 [exp] 171 / 3e-53 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 167 / 1e-51 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 161 / 2e-49 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.002G254000 [exp] 159 / 1e-48 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G070900 [exp] 154 / 2e-46 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 153 / 4e-46 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.010G061600 [exp] 152 / 6e-46 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037234 pacid=23152399 polypeptide=Lus10037234 locus=Lus10037234.g ID=Lus10037234.BGIv1.0 annot-version=v1.0 ATGGCCAACAGCGGCAACGGCGATGTGAAGGTGATCGGCGCATGGCCGAGTCCGTATGTGATGAGGCCCAGAATCGCCCTGAACATGAAATCAGTGGAGT ACGAGTTCTTGCAGGAGCAATTCGGTACCAAGAGCGAGCTCCTCCTGAAATCGAACCCGGTTCATAAGAAAATCCCGGTTCTCCTCCACAACGACAAAGC CATCTGCGAGTCCAACATTATCGTCGAGTACATCGACGAGGTTTGGTCATCTGGCCCTTCCCTGCTCCCTTCCGACGCCTACGACCGCGCCATTGCCCGC TTCTGGGCTGCCTACATCGATGAAAAGTGGTTCCCAAACCTAAGAGCAGCAGCATCAGCTCCCACGGAGGAAGCCAAGGCAGCAGCGAAGGATCAGCTCA AAGAAGGACTAGCCCTGCTGGAAGAAGCCTATGCGAAGATCAGCAAAGGCAAAGACTTCTTCGGAGGGGAAACGATCGGGTTCTTGGACATTGCGTTTGG GAGCTTGTTGGGTTGGGTGGGAGCAGTTTCAGCGATGATCGGGACTAAGGTGATCAACGAGGGGTCAACTCCTGGTCTGGCTAAATGGGTCGAGAAATTC TCAGCTCATGCTGCTGTGAAAGATTTGATGCCTGAGACTGGGAAACTAGTCGAGTTTGCAAAGTTATTGGCTGCTAAGAGGAAAGAGTAA
AA sequence Show only first row Show all	>Lus10037234 pacid=23152399 polypeptide=Lus10037234 locus=Lus10037234.g ID=Lus10037234.BGIv1.0 annot-version=v1.0 MANSGNGDVKVIGAWPSPYVMRPRIALNMKSVEYEFLQEQFGTKSELLLKSNPVHKKIPVLLHNDKAICESNIIVEYIDEVWSSGPSLLPSDAYDRAIAR FWAAYIDEKWFPNLRAAASAPTEEAKAAAKDQLKEGLALLEEAYAKISKGKDFFGGETIGFLDIAFGSLLGWVGAVSAMIGTKVINEGSTPGLAKWVEKF SAHAAVKDLMPETGKLVEFAKLLAAKRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	3.6	0.9592
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	4.5	0.9293
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	5.7	0.9344
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	9.2	0.9041
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	9.6	0.9419
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	14.5	0.9088
AT5G61820			unknown protein		Lus10017316 [exp]	15.9	0.9358
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	16.1	0.9283
AT2G14095			unknown protein		Lus10001299 [exp]	16.2	0.9243
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	17.5	0.9216

Compare expression of checked genes

Lus10037234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.