Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 317 / 2e-108 Putative membrane lipoprotein (.1) AT3G17350 99 / 3e-24 unknown protein AT5G50290 99 / 4e-24 unknown protein AT1G11915 78 / 3e-16 unknown protein AT5G02070 58 / 2e-09 Protein kinase family protein (.1) AT1G21270 50 / 1e-06 WAK2 wall-associated kinase 2 (.1) AT1G21230 47 / 1e-05 WAK5 wall associated kinase 5 (.1) AT1G21240 45 / 4e-05 WAK3 wall associated kinase 3 (.1) AT1G21250 42 / 0.0004 PRO25, WAK1 cell wall-associated kinase (.1) AT3G53840 41 / 0.0006 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036687 [exp] 519 / 0 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10036702 [exp] 215 / 6e-71 AT1G10380 110 / 4e-30 Putative membrane lipoprotein (.1) Lus10037237 [exp] 188 / 1e-60 AT1G10380 125 / 3e-36 Putative membrane lipoprotein (.1) Lus10037078 [exp] 175 / 4e-52 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036906 [exp] 147 / 6e-43 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10042105 [exp] 103 / 2e-25 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 102 / 3e-25 AT5G50290 368 / 2e-128 unknown protein Lus10043098 [exp] 97 / 4e-23 AT3G17350 334 / 7e-115 unknown protein Lus10020667 [exp] 67 / 5e-13 AT5G02070 150 / 5e-42 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040500 [exp] 377 / 2e-132 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 187 / 1e-57 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 178 / 2e-54 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 177 / 1e-53 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.008G099800 [exp] 102 / 3e-25 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 99 / 3e-24 AT3G17350 339 / 4e-117 unknown protein Potri.015G078700 [exp] 91 / 3e-21 AT5G50290 387 / 4e-136 unknown protein Potri.011G007900 [exp] 78 / 3e-16 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 77 / 5e-16 AT1G11915 360 / 1e-124 unknown protein Potri.008G059900 [exp] 64 / 2e-11 AT5G02070 628 / 0.0 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037235 pacid=23152529 polypeptide=Lus10037235 locus=Lus10037235.g ID=Lus10037235.BGIv1.0 annot-version=v1.0 ATGGCAATCACTCTCTTTGCATTTCTAGTTGTAGCTCTCACAACATCATCATTCCCTTCCATGGTCTCATCACAAGCCTGCCAGAACTACTGCGGAACCG TCCCAATCAAGTACCCTTTCGGTACCGGACCAGGTTGTGGCGACCCCCGGTTCCAAAAGTATGTTACTTGCGCCGAAAGCAAGCTCCTTTTCACCTCCCA CACCGGCTCCTACCCCGTCACAAACATAGACTACACATCCCAAGTCATCTACATCTCCGACCCTTCCATGTCGACCTGCTCTTGTACTCAGCCCAGCAAA GGGTTCGGACTCGATTGGGACGCCCCTTTCTCCTTCCACGAAAATACCGTCTTTACCCTCCTCGATTGTGGTCCAAACAACGGCAGTCACTGTGACATCA CCGGCTCGCCAATCTGCAGCTTCCTGTATTCATGCAGGGCCATCAGTACCCTGAACCTACCGATCTCTACCTGCTGTGTCTACACACCGGTCGATCTCGG CCCTTCATTCACGATGGACTTGGATAAGCTGAAGTGTTCGTCGTACTCTGGATTCTACAGTTTCAACGGGCAGGAGTCGAACCTGGATGAGTGGAAGTAT GGGATTGCATTGAAGTATAAGTTCAATGTGTTTGATGATTACCCTGGTGCTTGTGCCAACTGTGAGAGAAGCCATGGCGTTTGTGGATACAGTACTGGAG AGTTTGATTCATTTGTCTGCAACTGTCCTAGTGGGTTCAATTCCACTTCTGATTGCATCTTCTTTAGCCATGCTGCTTCAATCCATCTCCCTTACACCAT TGGTAACTTGTTATTCTTCAGTTTGTTACTTGTTCATCTTGGATTTTCAATGCTGTAA
AA sequence Show only first row Show all	>Lus10037235 pacid=23152529 polypeptide=Lus10037235 locus=Lus10037235.g ID=Lus10037235.BGIv1.0 annot-version=v1.0 MAITLFAFLVVALTTSSFPSMVSSQACQNYCGTVPIKYPFGTGPGCGDPRFQKYVTCAESKLLFTSHTGSYPVTNIDYTSQVIYISDPSMSTCSCTQPSK GFGLDWDAPFSFHENTVFTLLDCGPNNGSHCDITGSPICSFLYSCRAISTLNLPISTCCVYTPVDLGPSFTMDLDKLKCSSYSGFYSFNGQESNLDEWKY GIALKYKFNVFDDYPGACANCERSHGVCGYSTGEFDSFVCNCPSGFNSTSDCIFFSHAASIHLPYTIGNLLFFSLLLVHLGFSML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10380			Putative membrane lipoprotein ...		Lus10037235 [exp]	0	1
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	23.8	0.6453
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	39.6	0.6171
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	46.1	0.6020
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	93.9	0.5750
AT1G27340			Galactose oxidase/kelch repeat...		Lus10015775 [exp]	108.4	0.5300
					Lus10009611 [exp]	116.6	0.5498
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	130.5	0.5542
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	134.6	0.5521
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	144.3	0.5518
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	166.4	0.5452

Compare expression of checked genes

Lus10037235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.