Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 108 / 2e-29 Putative membrane lipoprotein (.1) AT3G17350 76 / 5e-17 unknown protein AT5G50290 75 / 1e-16 unknown protein AT1G11915 62 / 5e-12 unknown protein AT1G21270 52 / 2e-08 WAK2 wall-associated kinase 2 (.1) AT5G02070 45 / 7e-06 Protein kinase family protein (.1) AT2G46494 44 / 1e-05 RING/U-box superfamily protein (.1) AT1G21240 44 / 2e-05 WAK3 wall associated kinase 3 (.1) AT1G21210 44 / 2e-05 WAK4 wall associated kinase 4 (.1) AT1G21250 43 / 3e-05 PRO25, WAK1 cell wall-associated kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037235 [exp] 203 / 2e-66 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10036702 [exp] 143 / 2e-44 AT1G10380 110 / 4e-30 Putative membrane lipoprotein (.1) Lus10036906 [exp] 85 / 1e-20 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037078 [exp] 82 / 4e-19 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10043098 [exp] 81 / 1e-18 AT3G17350 334 / 7e-115 unknown protein Lus10042105 [exp] 66 / 2e-13 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 66 / 4e-13 AT5G50290 368 / 2e-128 unknown protein Lus10038443 [exp] 57 / 4e-10 AT1G11915 365 / 2e-126 unknown protein Lus10023362 [exp] 56 / 2e-09 AT1G11915 360 / 2e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040500 [exp] 140 / 1e-41 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 87 / 2e-21 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 87 / 2e-21 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 87 / 4e-21 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.008G099800 [exp] 77 / 1e-17 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 75 / 8e-17 AT3G17350 339 / 4e-117 unknown protein Potri.015G078700 [exp] 68 / 4e-14 AT5G50290 387 / 4e-136 unknown protein Potri.011G007900 [exp] 65 / 6e-13 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 61 / 1e-11 AT1G11915 360 / 1e-124 unknown protein Potri.008G059900 [exp] 55 / 2e-09 AT5G02070 628 / 0.0 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037236 pacid=23152313 polypeptide=Lus10037236 locus=Lus10037236.g ID=Lus10037236.BGIv1.0 annot-version=v1.0 ATGGCAATCACTCTCTTTGCATTTCTAGTAGTAGCTCTCACAACATCATTCCCTCTCATGGTCTCATCTCAAGCCTGCCAGAACTACTGCGGAACCGTCC CAATCAAGTACCCTTTTGGAACTGGACCAGGTTGTGGCGACCCTCGGTTCCAAAAGTATGTTACTTGCACCGAAAGCAAGCTCCTTTTCACCTCCCACAC GGGCTCCTACCCGGTCACAAACATAGACTACACCTCCCAAGTCATCTATATCTCCGACCCTTCAATGTCGACTTGCTCCTGCACTCAGCCCAGCAAAGGG TTCGGACTGACTGGGACGCCCCTTTCTCCTTCCACAAAAATACTGTCTTTACCCTCCTCGACTGTGGTTCAAACAACGGCACTCACTGTGACATCACCGG CTCGCCAATCTGCAGCTTCCTGTATTCCTGCAGGGCTATTAGTACGGTGA
AA sequence Show only first row Show all	>Lus10037236 pacid=23152313 polypeptide=Lus10037236 locus=Lus10037236.g ID=Lus10037236.BGIv1.0 annot-version=v1.0 MAITLFAFLVVALTTSFPLMVSSQACQNYCGTVPIKYPFGTGPGCGDPRFQKYVTCTESKLLFTSHTGSYPVTNIDYTSQVIYISDPSMSTCSCTQPSKG FGLTGTPLSPSTKILSLPSSTVVQTTALTVTSPARQSAASCIPAGLLVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10380			Putative membrane lipoprotein ...		Lus10037236 [exp]	0	1
					Lus10017954 [exp]	1.7	0.9358
					Lus10010378 [exp]	8.6	0.9157
AT2G36650			unknown protein		Lus10014389 [exp]	10.1	0.9148
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	10.2	0.8926
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	10.5	0.8736
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	10.6	0.9068
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	14.3	0.9100
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	15.8	0.9097
AT1G69260		AFP1	ABI five binding protein (.1)		Lus10036898 [exp]	16.4	0.8668
AT4G05430			Carbohydrate-binding X8 domain...		Lus10023276 [exp]	17.0	0.8994

Compare expression of checked genes

Lus10037236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.