Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62620 847 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 811 / 0 Galactosyltransferase family protein (.1) AT1G27120 795 / 0 Galactosyltransferase family protein (.1) AT4G21060 672 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 306 / 7e-95 GALT1 galactosyltransferase1 (.1) AT3G06440 287 / 7e-88 Galactosyltransferase family protein (.1.2) AT1G53290 68 / 5e-12 Galactosyltransferase family protein (.1) AT3G14960 66 / 2e-11 Galactosyltransferase family protein (.1) AT2G26100 59 / 7e-09 Galactosyltransferase family protein (.1) AT1G11730 46 / 6e-05 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036686 [exp] 899 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 848 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 843 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 702 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 332 / 2e-104 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 324 / 5e-102 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10036685 [exp] 296 / 5e-97 AT5G62620 62 / 1e-11 Galactosyltransferase family protein (.1.2) Lus10037171 [exp] 306 / 8e-96 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 308 / 2e-95 AT1G26810 831 / 0.0 galactosyltransferase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040400 [exp] 945 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 864 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 841 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 710 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 707 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G151600 [exp] 322 / 7e-101 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 322 / 7e-101 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 311 / 8e-97 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 70 / 1e-12 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 66 / 2e-11 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10037238 pacid=23152524 polypeptide=Lus10037238 locus=Lus10037238.g ID=Lus10037238.BGIv1.0 annot-version=v1.0 ATGAAGAGAGTCAAGTTCGATTCTACGATACTGCCGCTCAATCGGATTCGACTGATCCAAACTCTCATGGCGGGTCTTCTCCTCTACCTATTCTTCGTCA GCATCGAGATCCCTCTGTTTTTTCGAACTGGGTCGATGGACGTTTACGGGTCAGGCGACGGGTCTCTCGGCGACGGCTTGCCCAGTAGGCCGTGGATCTT CGAGCGCGACGAAAGGCAGTTGTTCGAGCGGCAAGAAGAAGTCGAACCCAAGTCACAAATCGGCGGCGGAGGTCCCAATCCCATGGGTGGGGAATATTCG AGTGCGGGTTACCGGAGCCCCGAGCGGAAAATGCGTGAGACGAACAAGAGAGCTTCGCAGTTGTTGTTCGATGTAATCTCTTCTCTCGACGATTTCTCGG TGCTGTACAAGACGGCGAAGCAGGCTTTGGTATCAGGGAAGAAAGTGTGGGAGGAATTGGAGTCGGGTAAAATTCAACCTGACCCGATCAGAACCGCCGA CTTCAACAACAAGAAGAACGAATCGTCATCATCGTGCCCGAATTCGATTACTCTGACTGGGTCGGAGTTCGCGACCCGGAAGAAGATCCTGGAGCTCCCT TGCGGGTTGACGCTGGGTTCTCACATCACCGTCGTCGGGAAGCCGAGATGGGGACATAACGAGAAGGATCCGAAGATCGCTTTACTTAAGGAAGGTGAAT CAGAATTGGTGTCTCAGTTCATGATTGAGCTTTTAGGATTGAAGACTGTTGATGGTGAAGACCCGCCAAGGATCCTGCATTTCAACCCGAGGTTGAAAGG TGATTGGAGTGGTAAGCCGGTGATTGAGCAGAACACTTGTTACAGAATGCAGTGGGGGAATGCTTTGCGGTGTGAAGGGTGGAACTCCAGAGCTGATGAG GAGACTGTTGATGGGCAGGTGAAATGTGAGAAATGGGTTCGGGACGATGATGGGAACACCGACGATTCGAAGGCGGTTTGGTGGTTGAACAGGTTGATAG GGAGGACGAAGAAGATCGCATATAATTGGCCGTTCCCTTTCGGAGAAGGAAAGTTGTTTGTTCTAACATTGACTGCTGGATTAGAAGGTTACCACATTAA TGTTGATGGGAGGCATATCACTTCGTTTCCATACCGTACTGGTTTTGTTCTTGAAGATGCTACCGGATTGAATTTGAATGGTGACGTGGATGTGGAAGCG GTATATGCTGCTTCGTTGCCTAGTTCGCATCCTAGCTTTGCTCCGCAGCAGCATCTTGAGATGTTTAAGAAATGGCAAGCGCCTGCTCTTCCAGTTGGCC AAATGGAGCTTTTTATCGGCATCCTCTCGGCTGGGAATCATTTTGCGGAGCGGATGGCTGTGAGGAAAACGTGGATGCAGCATCACATGATTAAATCTTC GAGTGTTGTTGCCAGATTCTTTGTTGCCCTGACCGGGAGAAAAGAAATCAACTTGATGCTAAAGAAAGAAGCAGAGTATTTCGGTGATATTGTGATAGTT CCTTACATGGATAACTACGACCTTGTCGTGTTAAAGACAGTTGCAATATGCGAATATGGGGTTCGCAATGTTGCTGCAAAATACATTATGAAGTGTGACG ATGATACATTTGTGAGAGTGGACGCTGTGATGAAGGAAACGAAGAAAGTGGATGTAGAAAGAAGCTTATATGTCGGAAACATCAACTACTATCACAAGCC CTTGCGTGATGGCAAATGGGCAGTGACATACGAGGAATGGCCAGAGGAAGAGTATCCTCCCTATGCAAACGGTCCAGGTTACATCGTGTCATCTGACATC GCAGAGTTCATAGTTTCCGAATTTGAAGATCACAAGCTCAGACTGTTTAAGATGGAAGATGTGAGCATGGGAATGTGGGTGGAGAAATTTAACACCTCGA AACCCGTTGAATATGTGCACAGCTTGAAGTTCTGCCAATTCGGTTGTGTGGACGATTACTACACCTCGCATTACCAGTCTCCAAGACAGATGATATGCCT TTGGGATAAATTACATCAGGGAAAACCCCAATGCTGCAACTGGAGATGA
AA sequence Show only first row Show all	>Lus10037238 pacid=23152524 polypeptide=Lus10037238 locus=Lus10037238.g ID=Lus10037238.BGIv1.0 annot-version=v1.0 MKRVKFDSTILPLNRIRLIQTLMAGLLLYLFFVSIEIPLFFRTGSMDVYGSGDGSLGDGLPSRPWIFERDERQLFERQEEVEPKSQIGGGGPNPMGGEYS SAGYRSPERKMRETNKRASQLLFDVISSLDDFSVLYKTAKQALVSGKKVWEELESGKIQPDPIRTADFNNKKNESSSSCPNSITLTGSEFATRKKILELP CGLTLGSHITVVGKPRWGHNEKDPKIALLKEGESELVSQFMIELLGLKTVDGEDPPRILHFNPRLKGDWSGKPVIEQNTCYRMQWGNALRCEGWNSRADE ETVDGQVKCEKWVRDDDGNTDDSKAVWWLNRLIGRTKKIAYNWPFPFGEGKLFVLTLTAGLEGYHINVDGRHITSFPYRTGFVLEDATGLNLNGDVDVEA VYAASLPSSHPSFAPQQHLEMFKKWQAPALPVGQMELFIGILSAGNHFAERMAVRKTWMQHHMIKSSSVVARFFVALTGRKEINLMLKKEAEYFGDIVIV PYMDNYDLVVLKTVAICEYGVRNVAAKYIMKCDDDTFVRVDAVMKETKKVDVERSLYVGNINYYHKPLRDGKWAVTYEEWPEEEYPPYANGPGYIVSSDI AEFIVSEFEDHKLRLFKMEDVSMGMWVEKFNTSKPVEYVHSLKFCQFGCVDDYYTSHYQSPRQMICLWDKLHQGKPQCCNWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	0	1
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	2.0	0.9157
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	4.0	0.8563
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10015882 [exp]	4.5	0.8445
AT1G62870			unknown protein		Lus10004325 [exp]	4.6	0.8740
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	5.5	0.8847
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	6.9	0.8694
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	8.4	0.8699
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10016445 [exp]	9.5	0.8579
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	9.6	0.8702
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	11.0	0.8636

Compare expression of checked genes

Lus10037238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.