Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09650 442 / 4e-158 ATPPA6 pyrophosphorylase 6 (.1) AT1G01050 84 / 3e-19 ATPPA1 pyrophosphorylase 1 (.1) AT4G01480 82 / 2e-18 ATPPA5 pyrophosphorylase 5 (.1) AT3G53620 78 / 8e-17 ATPPA4 pyrophosphorylase 4 (.1) AT2G46860 77 / 1e-16 ATPPA3 pyrophosphorylase 3 (.1) AT2G18230 74 / 2e-15 ATPPA2 pyrophosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035653 [exp] 565 / 0 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1) Lus10024422 [exp] 82 / 2e-18 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 83 / 5e-18 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10030179 [exp] 77 / 1e-16 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10028320 [exp] 77 / 2e-16 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10005139 [exp] 77 / 2e-16 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10041767 [exp] 76 / 4e-16 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 76 / 5e-16 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 76 / 6e-16 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081200 [exp] 462 / 4e-166 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 456 / 2e-163 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1) Potri.007G022700 [exp] 82 / 2e-18 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 81 / 8e-18 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.002G181300 [exp] 80 / 1e-17 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 80 / 2e-17 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10037239 pacid=23152272 polypeptide=Lus10037239 locus=Lus10037239.g ID=Lus10037239.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGGTAAGAGCACTGGCGGCTGCGGCCAACACGGCCACCCCAGCTTCTTGCTTACGGCCATTCGCTTACAAATCAAGGCAGAGCCTTCGTT TCAGCAAGAAACACTTGTCCTTTTCGCTGGCGAAGAGGTCCTTCAGCTGTAAGGCTATATACAATCCAGGCGATCTCCAGATCAAACAGGAGGGCCAACC CGAATCCCTTGATTATCGCGTCTTCTTTCTCGACGGTTCTGGGAGAAAGGTTTCTCCTTGGCATGACATACCGTTGCACTTGGGTGATGGTGTGTTCAAT TTCATTGTTGAAATCCCCAAAGAATCAAGTGCTAAAATGGAGGTTGCAACCGATGAGCCATTCACTCCAATCAAGCAGGACACTAAAAAGGGGAAATTAA GATATTACCCATATAACATAAACTGGAACTATGGGCTGCTTCCACAGACATGGGAAGACCCAACATTTGCAAACTCTGACGTTGAAGGAGCACTAGGAGA CAATGATCCTGTTGATGTTGTCGAAATTGGTGATAGCCAAAGAAAGGTTGGTGAAATACTGAAGGTGAAGCCCTTAGGCACTTTGGCCATGATTGATGAG GGCGAACTTGACTGGAAAATCGTGGCAATTTCAATGGACGATCCTCGGGCTTCTCTTGTAAACGATGTCGATGATGTTGAGAAACATTTTCCTGGTACGC TGACTGCAATCAGAGACTGGTTCAGAGACTACAAGATCCCCGACGGCAAGCCTGCAAACAGGTTTGGCCTCGACAATAAGGCCGCAAATAAGGAATATGC TCTTAAGGTGATCCAGGAAACAAATGAATCATGGTCAAAGCTGATCAAAAGATCAATTCCTGCTGGAGAGCTTTCACTTGCATAG
AA sequence Show only first row Show all	>Lus10037239 pacid=23152272 polypeptide=Lus10037239 locus=Lus10037239.g ID=Lus10037239.BGIv1.0 annot-version=v1.0 MATAVRALAAAANTATPASCLRPFAYKSRQSLRFSKKHLSFSLAKRSFSCKAIYNPGDLQIKQEGQPESLDYRVFFLDGSGRKVSPWHDIPLHLGDGVFN FIVEIPKESSAKMEVATDEPFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPTFANSDVEGALGDNDPVDVVEIGDSQRKVGEILKVKPLGTLAMIDE GELDWKIVAISMDDPRASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANRFGLDNKAANKEYALKVIQETNESWSKLIKRSIPAGELSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10037239 [exp]	0	1
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	1.0	0.7823
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	5.3	0.7217
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	5.7	0.7471
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	12.0	0.7486
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10037848 [exp]	12.7	0.7172
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	16.4	0.7112
AT4G40045			unknown protein		Lus10043427 [exp]	21.0	0.6941
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	51.3	0.6435
AT1G26180			unknown protein		Lus10035081 [exp]	51.4	0.7120
AT1G02260			Divalent ion symporter (.1)		Lus10039251 [exp]	81.9	0.7115

Compare expression of checked genes

Lus10037239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.