Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14620 236 / 2e-78 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT5G57550 145 / 7e-43 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G48070 135 / 4e-39 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT2G06850 134 / 1e-38 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT1G65310 133 / 3e-38 XTH17, XTR1, ATXTH17 xyloglucan endotransglucosylase/hydrolase 17 (.1) AT4G30290 133 / 3e-38 XTH19, ATXTH19 xyloglucan endotransglucosylase/hydrolase 19 (.1) AT4G30280 132 / 6e-38 XTH18, ATXTH18 xyloglucan endotransglucosylase/hydrolase 18 (.1) AT5G13870 132 / 9e-38 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G57560 131 / 2e-37 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT3G25050 130 / 3e-37 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035654 [exp] 311 / 5e-108 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1) Lus10020772 [exp] 141 / 3e-41 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 140 / 5e-41 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 140 / 9e-41 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 137 / 5e-40 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007348 [exp] 140 / 1e-39 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 136 / 2e-39 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 135 / 3e-39 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031393 [exp] 135 / 5e-39 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083800 [exp] 237 / 1e-78 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.003G159700 [exp] 137 / 1e-39 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.002G060500 [exp] 137 / 1e-39 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 135 / 5e-39 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G140300 [exp] 135 / 7e-39 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G146100 [exp] 134 / 7e-39 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 134 / 1e-38 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 134 / 1e-38 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.006G170100 [exp] 134 / 1e-38 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 134 / 1e-38 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16
Representative CDS sequence Show only first row Show all	>Lus10037240 pacid=23152601 polypeptide=Lus10037240 locus=Lus10037240.g ID=Lus10037240.BGIv1.0 annot-version=v1.0 ATGCCCAGAAACCTCAAACTTTCGTCAGCTCTCCTTATTATCACCTTGGTGGTATCATGTCTGCTCCAGATTTCCTCAGGATCCAGCATCGTATCCACTG GGGATTTCAACAAGGATTTCTATATCACATGGTCTCCTTCCCACGTTAACACATCTGCTGATGGTTCCACAAGAACCTTGAAGCTTGATCAACAGTCCGT GGACAACCTTACATTCTTCAAACAAACATCTTTTGCCGATGGGATGGATGATTGCGAAGAAAGAATTTATCTTTGGTTCGATCCCACAAAAGACTTCCAC ACTTACTCTGTTCTATGGAACCTTCACCAAATTGTGTTCATGGTGGACTCTATTCCAATAAGAACCTACAGAAACCATGCAGAGAAAGGGGCGGCATACC CAACGTTGCAGCCAATGAGCCTCAAGGCGAGCCTATGGAACGGGGACAGCTGGGCGACACGCGGTGGCAAAGACAAAATCGACCGGTCAAAGGCACCCTT TGTAGATTCATTCAGGAATTACAAGATCGATGCATGTGTTTGGAATGCAGGGAAGAACCCTAACTCTGGTAGGGAAGCAAGTAACTGGTGA
AA sequence Show only first row Show all	>Lus10037240 pacid=23152601 polypeptide=Lus10037240 locus=Lus10037240.g ID=Lus10037240.BGIv1.0 annot-version=v1.0 MPRNLKLSSALLIITLVVSCLLQISSGSSIVSTGDFNKDFYITWSPSHVNTSADGSTRTLKLDQQSVDNLTFFKQTSFADGMDDCEERIYLWFDPTKDFH TYSVLWNLHQIVFMVDSIPIRTYRNHAEKGAAYPTLQPMSLKASLWNGDSWATRGGKDKIDRSKAPFVDSFRNYKIDACVWNAGKNPNSGREASNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10037240 [exp]	0	1
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	10.4	0.8255
AT1G13920			Remorin family protein (.1)		Lus10036964 [exp]	23.3	0.7905
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	32.3	0.7036
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	38.1	0.7851
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	42.0	0.7806
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024711 [exp]	42.7	0.7183
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	47.0	0.7787
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030824 [exp]	48.4	0.6969
					Lus10018627 [exp]	52.4	0.7678
AT5G46530			AWPM-19-like family protein (....		Lus10011973 [exp]	56.4	0.7701

Compare expression of checked genes

Lus10037240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.