Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 258 / 7e-88 RANBP1 RAN binding protein 1 (.1) AT1G07140 253 / 1e-85 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT2G30060 251 / 5e-85 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G52380 46 / 1e-05 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035655 [exp] 380 / 9e-136 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10035656 [exp] 340 / 3e-120 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10037242 [exp] 339 / 1e-119 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10037931 [exp] 48 / 2e-06 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073400 [exp] 273 / 2e-93 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.006G102400 [exp] 268 / 1e-91 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.001G278900 [exp] 264 / 4e-90 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.016G119800 [exp] 264 / 6e-90 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 40 / 0.0007 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00638 [flax] [poplar] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Lus10037241 pacid=23152303 polypeptide=Lus10037241 locus=Lus10037241.g ID=Lus10037241.BGIv1.0 annot-version=v1.0 ATGTCTACTCCTCCTCCTACCTCGACCGCCTTCGTTCCCGAGCACAACAAGAAAGAGCGAGAGGACGAAGAAGAGAATTCACCTGCCGCTGATGATGAAG ACACCGGAGCTCAGGTCGCTCCTATCGTCAAGCTGGAAGAGATCGCCGTAACTACTGGCGAGGAGGATGAAGATCCTATTCTCGATCTGAAATCGAAGCT GTATCGGTTTGACAAGGATGGGAGCCAGTGGAAAGAGAGGGGCACCGGAACCGTAAAGCTATTGAAGCATAAGAATACCGGCAAAGTCCGCCTTGTCTTC CGCCAAGCTAGGACACTCAAGATCTGTGCTAATCATTTAGTTATTTCGGGAACAACAGTGCAAGAGCATCCTGGCAACGAGAAGTCGTGTATTTGGCATG CTACTGACTTCGCTGATGAGGAGTTGAAGTATGAGCTCTTCTGCATCAGATTTGCTTCTGTCGAGAACGCCAAAACTTTCATGGAGACTGTGCAGGAGGT GGCTGAGAGCCAGAGCAAGGAAGAAAGTAAAGATGCTGAAGACACTGCCAAACTTATTGACAAGTTGAGCGTTAAAGATGAGGGTGAAATTGCCAAGGAA ACCAGTTGCGATGCTTCTGATGTTGACAAGAAAGGAAAGCCATCTCCGCCGGCTTGA
AA sequence Show only first row Show all	>Lus10037241 pacid=23152303 polypeptide=Lus10037241 locus=Lus10037241.g ID=Lus10037241.BGIv1.0 annot-version=v1.0 MSTPPPTSTAFVPEHNKKEREDEEENSPAADDEDTGAQVAPIVKLEEIAVTTGEEDEDPILDLKSKLYRFDKDGSQWKERGTGTVKLLKHKNTGKVRLVF RQARTLKICANHLVISGTTVQEHPGNEKSCIWHATDFADEELKYELFCIRFASVENAKTFMETVQEVAESQSKEESKDAEDTAKLIDKLSVKDEGEIAKE TSCDASDVDKKGKPSPPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	0	1
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	1.0	0.9301
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	2.8	0.9193
AT1G36730			Translation initiation factor ...		Lus10004057 [exp]	3.2	0.9010
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	5.5	0.9096
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023662 [exp]	10.4	0.8990
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	10.6	0.9055
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	12.8	0.8735
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	13.3	0.8940
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	13.6	0.8797
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	14.1	0.8799

Compare expression of checked genes

Lus10037241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.