Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 262 / 5e-89 RANBP1 RAN binding protein 1 (.1) AT1G07140 260 / 3e-88 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT2G30060 256 / 1e-86 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G52380 46 / 1e-05 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035656 [exp] 368 / 6e-131 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10037241 [exp] 340 / 4e-120 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1) Lus10035655 [exp] 337 / 2e-118 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10037931 [exp] 50 / 4e-07 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073400 [exp] 276 / 1e-94 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.006G102400 [exp] 275 / 4e-94 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.001G278900 [exp] 271 / 8e-93 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.016G119800 [exp] 268 / 3e-91 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 41 / 0.0005 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00638 [flax] [poplar] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Lus10037242 pacid=23152527 polypeptide=Lus10037242 locus=Lus10037242.g ID=Lus10037242.BGIv1.0 annot-version=v1.0 ATGGCTACTCCTGCTCCCTCCGCCGACGTTCCTGAGCACAACAAAAAGGAGCGAGAGGACGAAGAAGAAACTTCACCTGCCGCCGACGATGAAGACACTG GAGCCCAGGTCGCTCCCATTGTGAAGCTCGAAGAGGTTGCCGTAACCACCGGCGAGGAGGATGAAGACCCTCTTCTCGATCTGAAATCGAAGCTTTATCG GTTCGACAAGGACGGGAGCCAGTGGAAAGAGAGAGGCACCGGAACCGTGAAGCTTTTGAAGCATAAGAATACCGGCAAGGTCCGCCTTGTCTTTCGTCAA GCTAGGACACTCAAGATCTGCGCTAATCATTTAGTTATTTCGGGAACAAAGGTGCAAGAGCATCCCGGCAACGAGAAGTCGTGTATTTGGCATGCTACTG ACTTCGCTGATGAGGAGTTGAAGGACGAGCTCTTCTGCATCAGATTTGCTTCCATCGAGAACGCCAAAACTTTCATGGAGACTGTTCAGGAGGTGGCTGA GAGTCAGAGCAAGGAAGAAAGTAAAGATGCTGCAGACACTGCCAAACTTCTCGACAAGTTGAGTGTTGAAGATGAGCCAAAAAAATCTGAAGATGCTGCC AAGGAAACCAGTGGTGATGCAGCTGCCGATGAGAAGAAGAAAAAGGCAGAGACAGAGAAGGATGAACCAGCTTCATCAGCTTGA
AA sequence Show only first row Show all	>Lus10037242 pacid=23152527 polypeptide=Lus10037242 locus=Lus10037242.g ID=Lus10037242.BGIv1.0 annot-version=v1.0 MATPAPSADVPEHNKKEREDEEETSPAADDEDTGAQVAPIVKLEEVAVTTGEEDEDPLLDLKSKLYRFDKDGSQWKERGTGTVKLLKHKNTGKVRLVFRQ ARTLKICANHLVISGTKVQEHPGNEKSCIWHATDFADEELKDELFCIRFASIENAKTFMETVQEVAESQSKEESKDAADTAKLLDKLSVEDEPKKSEDAA KETSGDAAADEKKKKAETEKDEPASSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035656 [exp]	1.0	0.9357
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	2.0	0.8627
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	4.0	0.8320
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10028921 [exp]	4.2	0.8283
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	6.2	0.8351
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	7.4	0.8286
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10034856 [exp]	10.6	0.8231
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10027288 [exp]	12.4	0.8247
AT3G56130			biotin/lipoyl attachment domai...		Lus10010226 [exp]	16.0	0.8077
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	17.0	0.8075

Compare expression of checked genes

Lus10037242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.