Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10300 147 / 3e-46 RmlC-like cupins superfamily protein (.1) AT3G04300 103 / 2e-29 RmlC-like cupins superfamily protein (.1) AT4G10280 102 / 2e-28 RmlC-like cupins superfamily protein (.1) AT4G28703 86 / 3e-22 RmlC-like cupins superfamily protein (.1) AT4G10290 76 / 3e-18 RmlC-like cupins superfamily protein (.1) AT2G32180 59 / 2e-11 PTAC18 plastid transcriptionally active 18 (.1) AT2G32650 59 / 2e-11 RmlC-like cupins superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035660 [exp] 224 / 1e-75 AT4G10300 147 / 5e-46 RmlC-like cupins superfamily protein (.1) Lus10035659 [exp] 158 / 7e-50 AT4G10300 175 / 5e-57 RmlC-like cupins superfamily protein (.1) Lus10025947 [exp] 98 / 1e-26 AT4G28703 132 / 6e-41 RmlC-like cupins superfamily protein (.1) Lus10014252 [exp] 94 / 5e-25 AT4G28703 133 / 1e-41 RmlC-like cupins superfamily protein (.1) Lus10030017 [exp] 64 / 3e-13 AT2G32180 192 / 4e-64 plastid transcriptionally active 18 (.1) Lus10035307 [exp] 57 / 8e-11 AT2G32180 190 / 2e-63 plastid transcriptionally active 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089600 [exp] 155 / 1e-48 AT4G10300 171 / 1e-55 RmlC-like cupins superfamily protein (.1) Potri.002G254800 [exp] 101 / 3e-28 AT3G04300 143 / 8e-46 RmlC-like cupins superfamily protein (.1) Potri.014G156900 [exp] 60 / 9e-12 AT2G32650 203 / 2e-68 RmlC-like cupins superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05899 [flax] [poplar] Cupin_3 Protein of unknown function (DUF861)
Representative CDS sequence Show only first row Show all	>Lus10037245 pacid=23152335 polypeptide=Lus10037245 locus=Lus10037245.g ID=Lus10037245.BGIv1.0 annot-version=v1.0 ATGCACCCACCATCCAACGACTTGCTTCTCCTCCATAGTTCGACGACTATGGCTCGGATGACTGCTCTCCGTCTGCTCGCCTCCGTCTTGATCTCGCTCT TGGCTCTTACTTCTCAAGCTCAACAAAGCGACATCAACGAACAGAAACTCGTTGATCCTCTGGCAATTCTCACTTACAAGGAGAACCCCCACACTGCCAC TGTAACAGAAACAGTTGATAAATCGGGAATTAAGGTCGTGAAGAATCCTCCAGACTCGAAGCTTGCTGCACTCGGAGTCCGCTCATGGCCCAGATGGGCA TTTGCTCCGAGCAAATTTCCATGGACGTATTCGGCAAATGAGACGTCGTATCTATTGGAAGGGAAGGCAAAGGTATACCCAGAGGGATCGGAGCAAGGCA TTGAGATCGCTGGTGGTGACTTGATTGATTTCCCTAAAGGGATGAGCTGCACTTGGGAAGTTTCTGTTGCCATATACAAGCACTACAAGTTCAATCAGTG A
AA sequence Show only first row Show all	>Lus10037245 pacid=23152335 polypeptide=Lus10037245 locus=Lus10037245.g ID=Lus10037245.BGIv1.0 annot-version=v1.0 MHPPSNDLLLLHSSTTMARMTALRLLASVLISLLALTSQAQQSDINEQKLVDPLAILTYKENPHTATVTETVDKSGIKVVKNPPDSKLAALGVRSWPRWA FAPSKFPWTYSANETSYLLEGKAKVYPEGSEQGIEIAGGDLIDFPKGMSCTWEVSVAIYKHYKFNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	2.4	0.9340
AT1G01800			NAD(P)-binding Rossmann-fold s...		Lus10006895 [exp]	5.5	0.8824
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	6.0	0.9338
					Lus10028488 [exp]	7.1	0.9057
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10018947 [exp]	7.3	0.9089
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10033491 [exp]	10.4	0.9066
					Lus10012066 [exp]	10.7	0.8958
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	11.8	0.9167
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	16.5	0.9210
					Lus10001144 [exp]	17.7	0.8518

Compare expression of checked genes

Lus10037245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.