Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 328 / 2e-112 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 292 / 5e-98 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 172 / 4e-52 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 64 / 2e-11 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035662 [exp] 465 / 7e-167 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 311 / 1e-106 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 311 / 8e-106 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 306 / 6e-104 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 174 / 7e-51 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 169 / 1e-50 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 153 / 9e-45 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 63 / 6e-13 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 52 / 1e-07 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149800 [exp] 348 / 2e-120 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 318 / 1e-108 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.003G094100 [exp] 196 / 8e-61 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G140000 [exp] 191 / 7e-59 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 148 / 1e-42 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 61 / 2e-10 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10037247 pacid=23152490 polypeptide=Lus10037247 locus=Lus10037247.g ID=Lus10037247.BGIv1.0 annot-version=v1.0 ATGGAATCAGTGTCAATGCAGCCGCCATTGGTGGTGGCTTTGACTTCCAAGAAGAAGAATAGCTTCTTGCAGCCTAAGTTTCAATTGCTAGCAAGAGATA ACGGGGTATTGTTCATTGCTATCGATCAGAACAAACCATTGGATGATCAAGAACCTTTTGACATTGTTTTACACAAGGTGTTAGGGAATGATTGGGTGCA AAAGCATCCAGAAGTGACTGTTATTGATCCTCCACACGCAATCAGACATCTGCAAAATCGACAGTCTATGCTCGAATATGTAGCTGATCTGAACTTGTCC GATTCCTATGTTTGTATCCCAAGGCAATTGGTTATTCACAGAGATCCATCATCCATTGCTCTTGAAGTTTCCAAGGCTGGACTAAAGTTACCTTTAGTTG CAAAACCACTAATGGTGGATGGAAGTGTTAAATCACATGAGTTGCGTCTTGCCTATGATCACTCCTCTCTCTCAGAACTTGAACCTCCTTTGGTCCTGCA GGAGTTTGTAAATCATGGCGGTGTTCTGTTTAAGATTTACATAATTGGGGAAGCCATCAAAGTTGTCCGCCGGTTATCCCTGCCTAATGTCAGTAGTCGT GAGCTAGCAAAAGTAGCTGGCGTGATGCCTTTCCCCCGAGTTTCGTGCGCTTCAGCCTCTGCGGAAGGTGCTGATTTAGATCCTTCAGTTGCAGAACACC CACCGCGACCTTTGTTACAGAGGCTTGCAGAGGAGCTTCATCGTAAGCTGGGACTGAGGTTGTTCAACATAGATATGATTCGAGAACATGAGACGAAAGA TAACAGAAGTTGA
AA sequence Show only first row Show all	>Lus10037247 pacid=23152490 polypeptide=Lus10037247 locus=Lus10037247.g ID=Lus10037247.BGIv1.0 annot-version=v1.0 MESVSMQPPLVVALTSKKKNSFLQPKFQLLARDNGVLFIAIDQNKPLDDQEPFDIVLHKVLGNDWVQKHPEVTVIDPPHAIRHLQNRQSMLEYVADLNLS DSYVCIPRQLVIHRDPSSIALEVSKAGLKLPLVAKPLMVDGSVKSHELRLAYDHSSLSELEPPLVLQEFVNHGGVLFKIYIIGEAIKVVRRLSLPNVSSR ELAKVAGVMPFPRVSCASASAEGADLDPSVAEHPPRPLLQRLAEELHRKLGLRLFNIDMIREHETKDNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10037247 [exp]	0	1
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	11.0	0.8375
AT1G73020			unknown protein		Lus10009732 [exp]	13.0	0.8308
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	14.7	0.8257
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	16.9	0.8242
AT4G34570		THY-2	thymidylate synthase 2 (.1)		Lus10023550 [exp]	21.3	0.7641
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Lus10007807 [exp]	22.8	0.7921
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	25.0	0.8209
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	37.5	0.7793
					Lus10031302 [exp]	52.9	0.7994
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10025018 [exp]	55.3	0.7884

Compare expression of checked genes

Lus10037247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.