Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50000 197 / 1e-62 methyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035666 [exp] 324 / 1e-112 AT1G50000 374 / 3e-131 methyltransferases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290100 [exp] 240 / 7e-79 AT1G50000 345 / 8e-119 methyltransferases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF04452 [flax] [poplar] Methyltrans_RNA RNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037251 pacid=23152338 polypeptide=Lus10037251 locus=Lus10037251.g ID=Lus10037251.BGIv1.0 annot-version=v1.0 ATGAGCAGCATTGCAATGTTAAGGCCTTGCTTTGCTGCTGCTACTACTACTACTAGGCTATCTGCTCTCCGTTTCAAAATAAGGGCTTTCTCCTCACCAT CGTCCAACTGCTCCAACCAGTCCCGCGGCGGACTCCCCCGCTTCTTCTCCGAGCAACTCCCCTCTTCTAAGGGAGGTGTTGTTCGTGTACAAGGAGATGA GTTTTGGCACATGACTAAAGCCCTAAGGTTGACTGCCAATGACAGGTATAATTTATGCATGGAGCTTGGAGCTCATAGTGTGACCCCTCTGCTGACAGAT CGTTCTCCATCAATCTCAGAAAATCGAGTTGATCGGTTGCAGCGTGTTGTTCTAGCAGCAACTAAACAATGTCAAAGATTGCATGGGATGATTCTGAATC CTCCTTTAACCATTGATGGGCTGTTACCTCTTGTTTCCCAGTCGAAACTATCTTTTTTGGCAACGGCAGAAGCTCCCCCTCTAGTTAGTACAATAGCTTC ATTGAGGAACGAACTGAGTGGATTGATGATCGTTGGACCAGAAGGAGATTTCACAGAGGAAGAGTTGAATAAGCTTATAACAGCAGGTGTGGTGAGTGTT GGTCTCGGACCACTTCGGCTGCGTGTTGAAACTGCTACAATAGCACTTTTGTCCACGCTTATGCTATGGTCCGACTCTCACCAACTTAACAATTCATAA
AA sequence Show only first row Show all	>Lus10037251 pacid=23152338 polypeptide=Lus10037251 locus=Lus10037251.g ID=Lus10037251.BGIv1.0 annot-version=v1.0 MSSIAMLRPCFAAATTTTRLSALRFKIRAFSSPSSNCSNQSRGGLPRFFSEQLPSSKGGVVRVQGDEFWHMTKALRLTANDRYNLCMELGAHSVTPLLTD RSPSISENRVDRLQRVVLAATKQCQRLHGMILNPPLTIDGLLPLVSQSKLSFLATAEAPPLVSTIASLRNELSGLMIVGPEGDFTEEELNKLITAGVVSV GLGPLRLRVETATIALLSTLMLWSDSHQLNNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50000			methyltransferases (.1.2)		Lus10037251 [exp]	0	1
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	18.5	0.8185
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	19.4	0.8239
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10024831 [exp]	23.2	0.8245
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	38.1	0.8219
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	42.8	0.7662
AT5G35910			Polynucleotidyl transferase, r...		Lus10039170 [exp]	51.9	0.8167
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	55.7	0.8101
AT1G05440			C-8 sterol isomerases (.1)		Lus10041200 [exp]	67.2	0.8058
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	79.5	0.8009
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027330 [exp]	90.9	0.7887

Compare expression of checked genes

Lus10037251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.