Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35615 373 / 5e-126 Eukaryotic aspartyl protease family protein (.1) AT1G31450 364 / 8e-123 Eukaryotic aspartyl protease family protein (.1) AT1G64830 347 / 2e-116 Eukaryotic aspartyl protease family protein (.1) AT5G33340 337 / 5e-112 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G03200 216 / 3e-65 Eukaryotic aspartyl protease family protein (.1) AT1G01300 196 / 2e-57 Eukaryotic aspartyl protease family protein (.1) AT2G28010 184 / 2e-53 Eukaryotic aspartyl protease family protein (.1) AT1G25510 182 / 3e-52 Eukaryotic aspartyl protease family protein (.1) AT2G28040 180 / 5e-52 Eukaryotic aspartyl protease family protein (.1) AT3G61820 181 / 2e-51 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035668 [exp] 733 / 0 AT2G35615 385 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 311 / 9e-102 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 305 / 8e-100 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 304 / 4e-99 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 297 / 2e-96 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 287 / 1e-92 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 285 / 9e-92 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 282 / 8e-91 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 281 / 4e-90 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105300 [exp] 417 / 1e-143 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 315 / 1e-103 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 313 / 5e-103 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 195 / 3e-57 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 194 / 7e-57 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 190 / 5e-55 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 189 / 2e-54 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 186 / 1e-53 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 178 / 5e-50 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G000600 [exp] 171 / 4e-48 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10037254 pacid=23152279 polypeptide=Lus10037254 locus=Lus10037254.g ID=Lus10037254.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCTGATCATTTCACACTCCTACTCTCACTATTCATTCTTCTCCTCCCACACATTAGTACTACATCCACGACGACGACCACGACGATCAGCT TAAACCTCATCCACCGCGACTCCCCACTCTCCCCACTACACAACCCAAACACCACCTTCTCCGACCGTCTCCACGCCTCCTTCCTCCGCTCCATCTCCCG CCACCACCGAGCACTAGACCACGTTGACTTCCAAACCGACCTAGTCTCAAGCGGAGGAGAGTACATGATGAACCTATCAATCGGGACCCCACCTTTCCCA ATCCTAGCCATAGCCGATACGGGAAGCGACCTCACCTGGCTACAGTCGAAGCCATGCGACCAATGCTACCCACAAAAGGGCCCCATCTTCGACCCTTCGA ATTCCACCACGTTCCGTAAGCTCCCATGCATGACCCCGCCATGCAACTCGTTAGACGAATCCGCCCGCTCCTGCTCCGACGACCAAACCACCTGCGGCTA CACCTACTCCTACGGGGACCACTCCTACACCACCGGATACCTCGCTGCGGATACCTTCACAATCTCGTCAGCGTCCATCCAAAACGTTGCGTTTGGCTGC GGGACTAGAAACGGCGGCAACTTTGACGAGCAAGGCTCCGGGATTGTCGGGCTGGGAGGTGGAGACCTCTCTCTCGTCTCTCAGCTAGGTGGCAGGATTG GGAAAAAATTCTCCTACTGCCTCCTCCCACTCGAGGCCGAAATATCAACCCAATCACAACCGTCTACAAGCAAGATTGTGTTCGGGGACAATCCGGTCTT TTCATCTCCGTCAAACGGCGTCGTTTCGACGACTCCTTTAGTGAAGAAGGATCCTTCGACTTATTACTATCTAACCCTGGAGGCAATCACTGTGGGGAGG AAGAAGCTGCTTTACACGAAAACGACGCCATCTTTGTCGGCGGGGATGGAGGAAGGGAACATAATAATAGACTCAGGGACGACGCTGACGTTCTTGGAAG CGGAATTCTACAGCTCGTTGGAGGCAGCTTTGGTGAAGGAGATAAAGATGGAGAGGGCTAACGACGTGAAGGATATGTTCAGTCTTTGCTTTAAGAAGAA GGAGAAGGAGGAGGTTGGGTTGCCGGCGATGAAGGTGCATTTCCGGGGCGGGGCGGAGGTAGAGTTGAAGCCGGTGAATACGTTCGTGGCGGCGGAGGAG GGATTGGTTTGCTTTACGATGCTGCCGACGAAGGATGTGGGGATATATGGGAATTTGGCTCAGATGAATTTTGTTGTTGGGTACGACCTTGGGAAAAGGA CCGTCTCCTTCCTCCCTGCGGATTGCTCCAAACATTAG
AA sequence Show only first row Show all	>Lus10037254 pacid=23152279 polypeptide=Lus10037254 locus=Lus10037254.g ID=Lus10037254.BGIv1.0 annot-version=v1.0 MAAPDHFTLLLSLFILLLPHISTTSTTTTTTISLNLIHRDSPLSPLHNPNTTFSDRLHASFLRSISRHHRALDHVDFQTDLVSSGGEYMMNLSIGTPPFP ILAIADTGSDLTWLQSKPCDQCYPQKGPIFDPSNSTTFRKLPCMTPPCNSLDESARSCSDDQTTCGYTYSYGDHSYTTGYLAADTFTISSASIQNVAFGC GTRNGGNFDEQGSGIVGLGGGDLSLVSQLGGRIGKKFSYCLLPLEAEISTQSQPSTSKIVFGDNPVFSSPSNGVVSTTPLVKKDPSTYYYLTLEAITVGR KKLLYTKTTPSLSAGMEEGNIIIDSGTTLTFLEAEFYSSLEAALVKEIKMERANDVKDMFSLCFKKKEKEEVGLPAMKVHFRGGAEVELKPVNTFVAAEE GLVCFTMLPTKDVGIYGNLAQMNFVVGYDLGKRTVSFLPADCSKH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35615			Eukaryotic aspartyl protease f...		Lus10037254 [exp]	0	1
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	2.2	0.7790
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	7.9	0.7176
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	19.5	0.7004
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	20.6	0.7013
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	24.4	0.6758
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10004917 [exp]	32.2	0.6839
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	44.3	0.6741
AT5G58820			Subtilisin-like serine endopep...		Lus10007042 [exp]	51.7	0.6241
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	52.2	0.6439
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10009858 [exp]	53.4	0.6378

Compare expression of checked genes

Lus10037254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.