Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31720 82 / 6e-19 Protein of unknown function (DUF1218) (.1) AT4G19370 71 / 2e-14 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035672 [exp] 239 / 8e-80 AT4G19370 104 / 9e-28 Protein of unknown function (DUF1218) (.1) Lus10033286 [exp] 120 / 1e-33 AT4G19370 119 / 6e-34 Protein of unknown function (DUF1218) (.1) Lus10034746 [exp] 94 / 2e-23 AT1G31720 103 / 7e-28 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235000 [exp] 110 / 7e-30 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10037256 pacid=23152450 polypeptide=Lus10037256 locus=Lus10037256.g ID=Lus10037256.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGAGAATTGGGTTGCTCTTCTTCCTCGCCATTGTCATCTCCCTCGCCCTCGCCTCCTTCCTCTCCTCCGTCATCGCCGAGACCAAGAAAG CCAAGGTGATCGGTCATCACCACTTCCTCCTTAATTTCCTCTCCCGTTTATTACCTTTGATTCCGATCGTTGATTTTCAATATTCTATATATACATATAT ATATATATATATGGGGCAGAAGAAGGATGTGAAATTGGTGAATGCGATGTGTTACATGCCGGAGAGCAATGCGTTCGGGTTCGGAATGGCGGCAATCGCG TGTCTGGTAGTTGCGCATACTCTTACCAACTTCTTCTTCTTCTCCTCATCCTCCTTTTCGTGTTCTTCGCCTAACAAGCCGCCAGCTGTCCCCACTGATC ATCCTCTGCCTCCTTCCAATTCCACCGTCTCTGCTTCTTCTTCTTCTTTGTCTTCTTCTGCCAAGTACAGCCGGAGTAAGCCTACTATTCCGGCCATCCT CCTCATGCTTCTCTCCTGGGCGAGTTTTGGCATGGCAGCAATGCTGTTAGGGGGAGCGACAAGCATGAGCGGAACTCAGCCGTATGGGAATGGATGGCTC GACGGAAGATGCTACGTCGTTAAGGATGGGATTTACGCCGGCTCTGGGGTTCTTACGCTTTTCTCCACAGCCGCCGCCCTTGCCTCCGCACTTGTCACCG TTCGGAAAGCCCAGTCTGAACCTAGTCCCAGAGTACATGCACAAGCTGCTGCTGCTGCTGCTGCTGCTTCATAG
AA sequence Show only first row Show all	>Lus10037256 pacid=23152450 polypeptide=Lus10037256 locus=Lus10037256.g ID=Lus10037256.BGIv1.0 annot-version=v1.0 MEKQRIGLLFFLAIVISLALASFLSSVIAETKKAKVIGHHHFLLNFLSRLLPLIPIVDFQYSIYTYIYIYMGQKKDVKLVNAMCYMPESNAFGFGMAAIA CLVVAHTLTNFFFFSSSSFSCSSPNKPPAVPTDHPLPPSNSTVSASSSSLSSSAKYSRSKPTIPAILLMLLSWASFGMAAMLLGGATSMSGTQPYGNGWL DGRCYVVKDGIYAGSGVLTLFSTAAALASALVTVRKAQSEPSPRVHAQAAAAAAAAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	2.6	0.8778
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	6.5	0.8627
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	9.5	0.8343
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10005619 [exp]	9.8	0.8356
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	10.4	0.8509
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	10.6	0.8505
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	11.4	0.8412
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	12.2	0.8096
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	13.2	0.8124
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	14.3	0.7907

Compare expression of checked genes

Lus10037256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.