Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19380 759 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 527 / 1e-178 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 494 / 1e-165 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 494 / 1e-165 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035673 [exp] 1281 / 0 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 521 / 5e-176 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 521 / 6e-176 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 517 / 2e-174 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 513 / 9e-173 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 339 / 3e-110 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10011801 [exp] 113 / 3e-27 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 102 / 2e-24 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234900 [exp] 869 / 0 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.010G069100 [exp] 555 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 543 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.002G259700 [exp] 168 / 9e-45 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10037257 pacid=23152607 polypeptide=Lus10037257 locus=Lus10037257.g ID=Lus10037257.BGIv1.0 annot-version=v1.0 ATGGCCGGAACTCCTCAACGGATAGGAAGGTTGGTCGGTGGGAGACTTGAGCACCCAAAGATATGGCTGGTAAGACTAGCACTGTGGCTGCTCTCCACGT GGATCGGGACCTTCATCCTATGTGGCAGACTCAGCATCTCTTCTCGTTTCCCCTTCTTGTCAAGTTTCCCAGAAATCCCTCTTGAGACAAGGGAACAAAT CGTCCTCTCATGGTCTCAGAGCATCTTCTTCCACCTCAGGATGCTCTTCAAGGCTTTCAAACTCCTCATTCCACTTATCTTCTTCTCCCAGGTTGACGAG AAGATTGAGAATCCGACATGGGAGGCAATTGGTTATCCGGGGTCGGACCCTGCATACAAACCAGAACAACAACATCCTTCAAACGAACTTCTCGCAGCAG CTGCTAATATCACCACCACCAAAGAACATCCCTACGGACCACTCCACAGAGGGATCATCAACACAAATCTCCCAACGAACACAGTCACAGACTCCCTACA AAAATCAGGATTCCAAGTCTCCGCCACCACTACCGGAACGATCAACATCAAATGCGATGCTGTAGTAGTCGGCTCCGGCTCGGGTGGTGGCGTGGTTGCA GGAATGCTAGCAAACGCCGGATACAAAGTGCTCGTCCTGGAGAAAGGAAGTTACTTTGCCAGAAACAACCTCTCATTACTCGAAGGCCCTTCCATGGACC AAATGTACCTCTCGGGAGGCCTCCGAGCCACCAACGACATGAGCTTCGTAGTCCTCGCTGGCTCGACAGTGGGAGGAGGCTCGGCTATCAACTGGTCCGC CTCCATCAAAACTCCACACAAGGTTACCAAAGAGTGGAGCCATGAATACCAACTGGAGCTGTTTGAGAGCAAGACGTATAGAGAAGCAATGGAGGTTGTT TGCCAGAGGATGGGAGTTCATACCAAAGTCGATGTGGTGGAAGGACTCAACAATGCTGTGTTGAGGAAAGGGTGCCAGCAATTAGGGTATCCAGTTGACG ACATCCCAAGAAACTCAGACGCAAAACATAGCTGTGGATGGTGTTGCTTCGGCTGCAAGGAAGGGCGAAAGATGGGGACTTCAGAGACATGGTTAGTGGA CTTGGTGAATTCAGGAAATGGCGTGATTCTACCCGGATGCGAAGCGGTCAAAGTACTGCACGAATCAAGAAATGGGAGGAAAATAGCTACTGGGGCTGTC TTCGAATCGATGACCAAGGAAATATTTATGGTGGAATCGAAGGTTACCGTAGTGGCTTGCGGAGCTCTAAGTACTCCGCCATTGCTGCGGAGAAGCGGGT TAAAGAATCGTCACATCGGGGAAAACCTCCATCTCCATCCGGTGACAATGGCGTGGGGATACTTTCCTGATGAAGAAGTATGGAAACAGAAGAGCTACGA CGGTCCGATAATGACGGCGATGTCGAAGGTTAGCCCTGAGGACGAATCAGAAGACGATGATGGTCTCTATGGGGCAATTATACAAACACCTTCTCTGCAT CCCGGAATGTTCTCCAGTTTCATGCCGTGGGTGTCCGGATCCGATTTGAAAAGGCGTATGACTAGGTTTTCGCGAACTGCGCACATATTCACATTGGTGA GGGACAGAGGATCGGGTGCTGTGAAAGATTGCTCCGATAACATTAGCTACGAGATGGAAGAGTCGGACGAGAGGAATCTGCAGAAGGGGGTGGAGAAGAT ACTGAGGATTCTGGCGGCGGCGGGAGCGGAAGAGATGGGGACGCATAATTTGGGCGGGAAGAGCATCAATGTGAAGGAAGTTGGGAGCGAGGAGTTGGAG AGGTTCGTGAAGGAGGAGAGCAGGAGGCCGATAAGAGGACTGCGGACGCAGCTGGGATCGGCGCATCAGATGGGGAGCTGCCGGATGGGGGTGGATCCGG CGGTGTCGGCGGTGAAGGAGACAGGGGAGACGTGGGAGGTGGAAGGGCTGTACGTGGCGGATTCGAGCGTTTTCCCGACGGCACTGGGGGTGAATCCGAT GGTCACTGTTCAGGCGATTGCTTATTGCACGGGTCTCTCGGTTCTTGAGCGTCTCAGGAGGAAGAAATTGTGCTCTGAGTTGTAA
AA sequence Show only first row Show all	>Lus10037257 pacid=23152607 polypeptide=Lus10037257 locus=Lus10037257.g ID=Lus10037257.BGIv1.0 annot-version=v1.0 MAGTPQRIGRLVGGRLEHPKIWLVRLALWLLSTWIGTFILCGRLSISSRFPFLSSFPEIPLETREQIVLSWSQSIFFHLRMLFKAFKLLIPLIFFSQVDE KIENPTWEAIGYPGSDPAYKPEQQHPSNELLAAAANITTTKEHPYGPLHRGIINTNLPTNTVTDSLQKSGFQVSATTTGTINIKCDAVVVGSGSGGGVVA GMLANAGYKVLVLEKGSYFARNNLSLLEGPSMDQMYLSGGLRATNDMSFVVLAGSTVGGGSAINWSASIKTPHKVTKEWSHEYQLELFESKTYREAMEVV CQRMGVHTKVDVVEGLNNAVLRKGCQQLGYPVDDIPRNSDAKHSCGWCCFGCKEGRKMGTSETWLVDLVNSGNGVILPGCEAVKVLHESRNGRKIATGAV FESMTKEIFMVESKVTVVACGALSTPPLLRRSGLKNRHIGENLHLHPVTMAWGYFPDEEVWKQKSYDGPIMTAMSKVSPEDESEDDDGLYGAIIQTPSLH PGMFSSFMPWVSGSDLKRRMTRFSRTAHIFTLVRDRGSGAVKDCSDNISYEMEESDERNLQKGVEKILRILAAAGAEEMGTHNLGGKSINVKEVGSEELE RFVKEESRRPIRGLRTQLGSAHQMGSCRMGVDPAVSAVKETGETWEVEGLYVADSSVFPTALGVNPMVTVQAIAYCTGLSVLERLRRKKLCSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10037257 [exp]	0	1
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	1.4	0.8686
					Lus10026392 [exp]	2.2	0.8328
					Lus10038613 [exp]	3.7	0.8625
					Lus10029449 [exp]	6.5	0.8497
					Lus10005948 [exp]	6.9	0.8019
					Lus10013622 [exp]	9.2	0.7887
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	11.5	0.8121
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	13.4	0.8404
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	13.4	0.8172
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041225 [exp]	16.9	0.7754

Compare expression of checked genes

Lus10037257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.