Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19390 243 / 2e-80 Uncharacterised protein family (UPF0114) (.1) AT5G13720 182 / 1e-56 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035674 [exp] 448 / 8e-148 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019743 [exp] 184 / 2e-57 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10016380 [exp] 176 / 2e-53 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 174 / 6e-53 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10018793 [exp] 158 / 2e-47 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1) Lus10032866 [exp] 148 / 5e-43 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234600 [exp] 291 / 1e-99 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.009G057300 [exp] 186 / 4e-58 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1) Potri.014G039000 [exp] 167 / 2e-50 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Lus10037258 pacid=23152287 polypeptide=Lus10037258 locus=Lus10037258.g ID=Lus10037258.BGIv1.0 annot-version=v1.0 ATGACCCAATCCCTACCTTTGCTCCATAGACCGAACTCATTCCCTGTCGCCAGAATTCCCTCCGCTCTAACCCGGAACGTCACTAATGCCTCCGGCTTTA GCTGCCATCGCCGGCTGCCGCTCGAAATCGCCAGATGTGCCAACGCTGACGTTCCTCTTGTTGCAGAACCCACATCGTCTTCTTCACCGTCCACCAAACC TCATGCGATCGGGTCGAAGAGGACGAAACTGGAGTCCCTGGAGGAAGATATAGAGAGGATTGTTTACCGATGCCGGTTTCTGGCGATCCTTGCTGTTTTC GGTTCCTTGGTTGGATCGTTGTTATGCTTTATCAAGGGTTGCGCATATGTTGCATCTTCGTTTATGCAGTATTTCGCCACTCGTCGAAAAGTGATCATAT TACTAGTAGAAGCCATTGATGTGTATCTCTTGGGAACGGTGATGCTAGTTTTCGGAATGGGACTCTACGAGCTCTTTATTAGCAATCTCAGCCCGTCAAA GATGTCGCCAGGGGAAACAATGGCAGATCGCTCAAATTTATTCGGCATGTTCACGTTGAAGGAGCGACCTAGATGGTTAGAAGTGAAGACTGTGAATGAG TTGAAGACGAAGCTGGGACACGTGATCGTGATGCTCCTTCTGATCGGATTTTTCGAGAAAAGTAAGACAGCTGCTATACAATCCCCGCTTGACCTACTTT GCTTTGCGACCTCTGTGCTTCTGTGTTCAGGTTGCCTCTACTTGTTATCTAAGCTCAGCGACCCAAAATGA
AA sequence Show only first row Show all	>Lus10037258 pacid=23152287 polypeptide=Lus10037258 locus=Lus10037258.g ID=Lus10037258.BGIv1.0 annot-version=v1.0 MTQSLPLLHRPNSFPVARIPSALTRNVTNASGFSCHRRLPLEIARCANADVPLVAEPTSSSSPSTKPHAIGSKRTKLESLEEDIERIVYRCRFLAILAVF GSLVGSLLCFIKGCAYVASSFMQYFATRRKVIILLVEAIDVYLLGTVMLVFGMGLYELFISNLSPSKMSPGETMADRSNLFGMFTLKERPRWLEVKTVNE LKTKLGHVIVMLLLIGFFEKSKTAAIQSPLDLLCFATSVLLCSGCLYLLSKLSDPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	0	1
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	3.5	0.7821
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	3.9	0.8073
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	7.4	0.7782
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	11.2	0.7729
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	11.7	0.6913
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032544 [exp]	13.4	0.7791
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	17.0	0.7814
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	20.0	0.7708
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	20.0	0.7176
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	20.9	0.6131

Compare expression of checked genes

Lus10037258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.