Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45320 182 / 2e-58 unknown protein AT4G26490 58 / 3e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 55 / 4e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035675 [exp] 326 / 8e-116 AT5G45320 174 / 9e-56 unknown protein Lus10015606 [exp] 60 / 1e-10 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032906 [exp] 58 / 4e-10 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046000 [exp] 250 / 3e-85 AT5G45320 164 / 3e-51 unknown protein Potri.004G234500 [exp] 222 / 4e-74 AT5G45320 173 / 7e-55 unknown protein Potri.011G165500 [exp] 69 / 4e-14 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 66 / 4e-13 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037259 pacid=23152344 polypeptide=Lus10037259 locus=Lus10037259.g ID=Lus10037259.BGIv1.0 annot-version=v1.0 ATGCCAAAGAAGCTAACCGCCCAGCGCCGGACCCACCCCTTGTGGTGGTGCGCGGCCCTGATCTGCATGCTCCTGACCGTCGCCATCATCTTCGGCGGCA TCGCCGTCTTCATCGGCTACCTAGTCATCCACCCGCGTGTCCCCATCCTCAGCGTCGTCAACGCCCACCTGGACCAGTTCCAGTACGACTACGCGGGGAC CCTGGTCACCCAGGTGACCGTCATCGTCAGGTCCGAGAACGACAACATGAAGGCCCACTCGTCGTTCTCGGACATGAACCTGAAGCTCATCTTCGGAGGT ATGCACATCGCGTACCTCCAGGCCGGGCCTTACGATGTCAGGAAGAACAGCACGATCGACTTCAACTACGTGGTGGTGTCGAAGCCCATACCGCTGACTC CTGCCCAGATGCAGGACGTTGACGTGATGCTGAAGCAGGACAGGGTGCGGTTCGAGCTACAGGGGAGCGCTAGGGCTCGGTGGAGAGTCGGACCGTTGGG TTCGATTCGGTTCTGGGATCATTTGAATTGTCGGCTTAATTTCCACCGTTCCAATGGTTCATATGTTCGTTCTCCTTGCACCTCCAGACCTAAATAA
AA sequence Show only first row Show all	>Lus10037259 pacid=23152344 polypeptide=Lus10037259 locus=Lus10037259.g ID=Lus10037259.BGIv1.0 annot-version=v1.0 MPKKLTAQRRTHPLWWCAALICMLLTVAIIFGGIAVFIGYLVIHPRVPILSVVNAHLDQFQYDYAGTLVTQVTVIVRSENDNMKAHSSFSDMNLKLIFGG MHIAYLQAGPYDVRKNSTIDFNYVVVSKPIPLTPAQMQDVDVMLKQDRVRFELQGSARARWRVGPLGSIRFWDHLNCRLNFHRSNGSYVRSPCTSRPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45320			unknown protein		Lus10037259 [exp]	0	1
AT3G57990			unknown protein		Lus10012013 [exp]	3.5	0.7653
AT1G02020			nitroreductase family protein ...		Lus10030289 [exp]	13.0	0.7319
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	19.8	0.7378
AT1G26920			unknown protein		Lus10030488 [exp]	23.2	0.7080
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Lus10002674 [exp]	28.1	0.7204
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	29.0	0.7146
AT5G11810			unknown protein		Lus10022300 [exp]	29.4	0.7224
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	34.6	0.6604
AT2G35900			unknown protein		Lus10021249 [exp]	37.0	0.7106
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	37.3	0.6509

Compare expression of checked genes

Lus10037259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.