Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31650 553 / 0 ATROPGEF14, ROPGEF14 RHO guanyl-nucleotide exchange factor 14 (.1) AT4G38430 319 / 3e-102 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT1G79860 315 / 3e-101 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G24620 307 / 5e-98 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT5G02010 306 / 2e-97 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G00460 303 / 3e-97 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT4G13240 301 / 1e-95 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G16130 301 / 5e-95 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT1G01700 297 / 2e-94 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT5G05940 300 / 5e-94 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035676 [exp] 1008 / 0 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10033282 [exp] 763 / 0 AT1G31650 645 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10034742 [exp] 723 / 0 AT1G31650 634 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10035865 [exp] 306 / 2e-98 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10025797 [exp] 306 / 3e-97 AT1G79860 608 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10009874 [exp] 306 / 6e-97 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 306 / 1e-96 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10023983 [exp] 305 / 2e-96 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 304 / 7e-96 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127300 [exp] 660 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.003G106400 [exp] 660 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.002G159700 [exp] 318 / 8e-103 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.009G140100 [exp] 320 / 4e-102 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 318 / 1e-101 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.003G052600 [exp] 315 / 8e-101 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.014G084200 [exp] 309 / 2e-99 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 310 / 1e-98 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.001G183800 [exp] 310 / 2e-98 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.008G062000 [exp] 310 / 8e-98 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10037260 pacid=23152445 polypeptide=Lus10037260 locus=Lus10037260.g ID=Lus10037260.BGIv1.0 annot-version=v1.0 ATGGTGATGCGAAGCAGACTTGCTTGCTGCACTTGGGATAGAAGAGGGATTAGTATAGACTTCGATCAAGACCACACCAGTATTATGACTTATGATGGCC TGGAGAGCTGCATTCAAAACAATGAAAGTGAGACAAGTACTAGAGTCAGTGGTGAACGTGTAAGCGACTCCTTTGATGATTGTGCTTCCTCCAGCTGCTC ATCCAGCAAGGATGTTACCAGAATCGGATCTTTCTCTTCGAAATGGTTTGGAGTTAAAAGGGATGGTGATGATGATCAGACTTCTGATGACTGGGAGTTC CGTCACAAGTTCTATGTCAAAGACAAACCACCGTACGTGCTTGAGGTTTCGGATGTCGAGACAATGAAGGAGAAATTCGCTAAGCTTTTGTTGGGCGAAG ATATCACCGGCGGGAGTAAAGGCATTGCTGCTGCATTAGCATTGTCCAATGCCATAACGAGCCTCGCAGCATCTGTGTTTGGAGAGATGTGGAAGTTAGA GCCATTGCCGGAAGAAATCAAGAATAAATGGAGAAGGGAAATGGACTGGTTGCTCTCTCCTACTAACTATATGGTTGAGTTGGTTCCTGCTAAGCAAAAT GGTGTCAATGGCCGAACGTTGGAGATAATGACTCCCAAAGCTCGTGCAGACATCCACATGAATCTTCCTGCACTTACGAAGCTGGACTCTATGCTAATCG AGACATTGGATTCAATGGTGAAATCTGAGTTTTGGTACTCAGAGGTAGGCAGCAGAGACGAGGGACGAAACAAGAGTCCTGGGGAGAGCAAGAGGTGGTG GCTTCCATTGCCACAAGTTCCGACAGCTGGACTTTCCGATTCGGAAAGGAAGAAGCTGATCTATAAGTCCAGGGTTGTATATCAAGTATTCAAGGCTGCC AGAGCCATCAACTGTAGTATTCTGCTTGAAATGCAGGTCCCAACTGTTATTAAGGATGCACTTCACAAGTCTGGAAGGGAAAATCTTGGGGAGGAACTCT ACAAGTTACTGACAAAAGTATCATCAGCCACTGCAGAGGAATTGCTGAAGTCACTTAATCTGCAATCCGAACACAATGTACTGGAGGTCGTTAACAAGTT CGAAGCTTTCGTATTGGGATGGAAAGAGAGAAGCAAAGCAGCACAAGTTGGCAAGAAATCCCCGAATAGAACATCTGAGATTGATAAGGTGCTAGTTAGT AGAGCGGAAGGCATCGTCCAGCAACTGAAGGCCAGACATCCAAACCTCCCTCATACATTTCTTGACTCCACCAAAATCCAATATGGCAAGGATGTAGGAC ATGCGATCCTAGAAGCATACTCTCGGGTTCTGGGGAACCTGGCATGGAGCATATTGACAAGAATAGCAGACATTTTGCAAGAAGACAATGTGAACAATCC GAATTCTCCAGGGACTACGAGTTGCAGAAGCGAAATTGCAGGGTTGTCTGATATCATGTCAACTAGTGTGAAACTGCGTGAAGCTGAGTATGATGAGGTG AACAAGGTGGAGGAGAGGCTGAGATATTCGGATGCAAGCAATTCGGTTTCGGATTGGGAATTCTGCCATAGCGAACCGAAATCGAGCTCATCTGCTAATG AAACTCCTAGCAGGAGCCGAGTATGGTGCATTGGCGGAGAGGCTTGTATGAGCACCTCTTCTCCCAGATACTCGCCATGA
AA sequence Show only first row Show all	>Lus10037260 pacid=23152445 polypeptide=Lus10037260 locus=Lus10037260.g ID=Lus10037260.BGIv1.0 annot-version=v1.0 MVMRSRLACCTWDRRGISIDFDQDHTSIMTYDGLESCIQNNESETSTRVSGERVSDSFDDCASSSCSSSKDVTRIGSFSSKWFGVKRDGDDDQTSDDWEF RHKFYVKDKPPYVLEVSDVETMKEKFAKLLLGEDITGGSKGIAAALALSNAITSLAASVFGEMWKLEPLPEEIKNKWRREMDWLLSPTNYMVELVPAKQN GVNGRTLEIMTPKARADIHMNLPALTKLDSMLIETLDSMVKSEFWYSEVGSRDEGRNKSPGESKRWWLPLPQVPTAGLSDSERKKLIYKSRVVYQVFKAA RAINCSILLEMQVPTVIKDALHKSGRENLGEELYKLLTKVSSATAEELLKSLNLQSEHNVLEVVNKFEAFVLGWKERSKAAQVGKKSPNRTSEIDKVLVS RAEGIVQQLKARHPNLPHTFLDSTKIQYGKDVGHAILEAYSRVLGNLAWSILTRIADILQEDNVNNPNSPGTTSCRSEIAGLSDIMSTSVKLREAEYDEV NKVEERLRYSDASNSVSDWEFCHSEPKSSSSANETPSRSRVWCIGGEACMSTSSPRYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	0	1
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	1.0	0.8953
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	1.7	0.8898
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	2.0	0.8901
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	4.5	0.8408
					Lus10033824 [exp]	4.6	0.8378
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Lus10017047 [exp]	5.1	0.8536
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	5.5	0.8689
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	9.2	0.8472
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	9.4	0.8604
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10005207 [exp]	10.2	0.8338

Compare expression of checked genes

Lus10037260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.