Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 64 / 4e-12 F-box/RNI-like superfamily protein (.1) AT5G02930 56 / 3e-09 F-box/RNI-like superfamily protein (.1) AT2G39415 48 / 3e-07 F-box family protein (.1) AT5G02700 49 / 9e-07 F-box/RNI-like superfamily protein (.1) AT3G28410 49 / 1e-06 F-box/RNI-like superfamily protein (.1) AT5G03100 47 / 3e-06 F-box/RNI-like superfamily protein (.1) AT5G53840 44 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G55660 43 / 0.0001 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT1G67390 43 / 0.0001 F-box family protein (.1) AT3G60790 43 / 0.0001 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029083 [exp] 217 / 6e-68 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10037289 [exp] 177 / 1e-52 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029003 [exp] 164 / 5e-47 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10003696 [exp] 152 / 5e-46 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034290 [exp] 134 / 5e-37 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10036905 [exp] 97 / 3e-25 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10028664 [exp] 67 / 7e-13 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10030920 [exp] 60 / 2e-10 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10029952 [exp] 59 / 4e-10 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395000 [exp] 51 / 1e-07 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G104200 [exp] 47 / 6e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 45 / 1e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 44 / 4e-05 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 43 / 8e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.013G146800 [exp] 43 / 9e-05 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 43 / 0.0001 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G011200 [exp] 42 / 0.0003 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002100 [exp] 40 / 0.0008 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037261 pacid=23152591 polypeptide=Lus10037261 locus=Lus10037261.g ID=Lus10037261.BGIv1.0 annot-version=v1.0 ATGGAATCATCACCCCCCACCAGTACCGTCGATCGGATCTCATACTTACCGGACGAAATCATCTACCGCGTCCTTCAAAGCCTAAACTCTCATAACCTAG CGGCGAGAACTTGCATCTTGTCGAGAAGGTGGCTCCACATGTGGCACTCTTGCCCCGTTGTCGAGTTTCCATGGAGAACAAACTTGCAGAGTTCCGCCAC TGCCGGTACCAAGAGGCTTCTTTATGAGAGATCACTTCCATTACTTTTGGACTCCTTCACCATCTCACTGCCATTATATCTCAACCTCTATGGTCTCAGC CAGTTTCTGTCCATAGTGATCGATGGAGGCAGATCCCCGCTTAAGGTTGTGGTTATAAATAGCGACTGCAGTTTTTCCATGGGAGGAGCAGTGTTTTCGA ATTGCAGCCGTGCCAAATCTCTCCACCTGAAAGGCTGCGACCTAAATCGATGGCACAGTTCGAATACTCGTCTCGACAATCTCCAGGAACTCTGTCTCGA ACAGGTCCGGGTTAGCTCGCAGAGTTTTCTGAGTTGTCTGGCTAATGCTCCTCGTCTAGAGAAATTGACTTTGAAATTCATACTCGGGATTGATAGATTG GATATCTCTGCTTCTAATTTCCCCAACTTGATATTCGAGATATCACGATATTAG
AA sequence Show only first row Show all	>Lus10037261 pacid=23152591 polypeptide=Lus10037261 locus=Lus10037261.g ID=Lus10037261.BGIv1.0 annot-version=v1.0 MESSPPTSTVDRISYLPDEIIYRVLQSLNSHNLAARTCILSRRWLHMWHSCPVVEFPWRTNLQSSATAGTKRLLYERSLPLLLDSFTISLPLYLNLYGLS QFLSIVIDGGRSPLKVVVINSDCSFSMGGAVFSNCSRAKSLHLKGCDLNRWHSSNTRLDNLQELCLEQVRVSSQSFLSCLANAPRLEKLTLKFILGIDRL DISASNFPNLIFEISRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037261 [exp]	0	1
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	11.3	0.7466
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	22.4	0.6664
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	96.0	0.6222
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	127.5	0.6173
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	178.4	0.5904
					Lus10028233 [exp]	179.7	0.5780
					Lus10033844 [exp]	180.0	0.5701
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	282.0	0.5570

Compare expression of checked genes

Lus10037261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.