Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31600 460 / 4e-162 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02485 66 / 2e-12 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G20350 49 / 2e-06 oxidoreductases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035676 [exp] 142 / 3e-37 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10015618 [exp] 61 / 2e-10 AT4G02485 238 / 1e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037635 [exp] 61 / 2e-10 AT4G02485 246 / 7e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10003687 [exp] 54 / 6e-08 AT4G20350 294 / 4e-101 oxidoreductases (.1.2) Lus10028991 [exp] 49 / 2e-06 AT4G20350 283 / 5e-97 oxidoreductases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106300 [exp] 508 / 0 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G131200 [exp] 59 / 7e-10 AT4G02485 239 / 2e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G161600 [exp] 56 / 7e-09 AT4G20350 295 / 3e-101 oxidoreductases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037263 pacid=23152441 polypeptide=Lus10037263 locus=Lus10037263.g ID=Lus10037263.BGIv1.0 annot-version=v1.0 ATGGGTCTCCCAAGGTTTACCCGGCCGAAGGGAGGCGATGCCCAGTCAAGTCCCAATCTTTACGTAGCGAATTGCGGACCAGCTGTTGGACTTTCCTACG ATACTATTGCTTCCGTGTTTTCCGCTTACGGTGAGGTCGCCGGAGTTTATGCAGCTGATGAGAGTGGTACCCGCGTTATTGTTTCTTTTGGAGAAGTGGA TTCTGCGCAAGCTGCTCTCCAAGCATTACATGGGCGTCCTTGTACGGAGCTTGGAGGACGTTCTTTGCACATTCGTACTTCTGTGCTTCACCCGACTGGC AAGAACCAAGTCAACCAAGCAATTCCAGTATCCTATCTGGCTTCAGAAGTGAATATTCCGGGCCTTTACTTGCTGCATGACTTCGTCTCTGTAGAAGAAG AGCAAGAATTGCTTGCAGCAGTTGACGGGAGACCTTGGAACAATCTGTCGAAGAGAAGGGTTCAACATTATGGATATGAGTTCTGTTACGATACAAGAAA TGTGAATACGAAAAGGTTCCTGGGAGAACTTCCATTGTTTGTTTCTCCTGTACTACAAAGGATATCATCATTTCCAGACCTAGATCATAGTGCAAGTTCG ATGCTGGACCAGCTTACGGTTAATGAGTATCCACGAGGGGTTGGATTGTCCCCACACATAGACACCCATTCAGCATTTGAGGGATTGATTTTTAGCCTTT CATTAGCTGGGCCTTGTATTATGGAGTTTAGGCAATATGTAGATGGTCATAATGCTAGAGCTACTTCAAGTAGTGAGGTGGAAGTTGATAACCCTGACGC TGGCTCAAATTTGATCAGGAAGGCCATCTACCTTCCTCCTCGCTCAATGCTTCTTTTATCCGCAGAAGCACGTTATGCTTGGAACCATTATATTCCACAT CATAAGATAGACGTGGTGGATGGTGCAGTGATAAAAAGAAATTCAAGACGGGTATCTTTTACCTTCCGTAAGGTACGACGAGGTCCCTGCCAGTGTGAAT TTCCCCAATACTGTGATTCTCAGAGAGGATGA
AA sequence Show only first row Show all	>Lus10037263 pacid=23152441 polypeptide=Lus10037263 locus=Lus10037263.g ID=Lus10037263.BGIv1.0 annot-version=v1.0 MGLPRFTRPKGGDAQSSPNLYVANCGPAVGLSYDTIASVFSAYGEVAGVYAADESGTRVIVSFGEVDSAQAALQALHGRPCTELGGRSLHIRTSVLHPTG KNQVNQAIPVSYLASEVNIPGLYLLHDFVSVEEEQELLAAVDGRPWNNLSKRRVQHYGYEFCYDTRNVNTKRFLGELPLFVSPVLQRISSFPDLDHSASS MLDQLTVNEYPRGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRQYVDGHNARATSSSEVEVDNPDAGSNLIRKAIYLPPRSMLLLSAEARYAWNHYIPH HKIDVVDGAVIKRNSRRVSFTFRKVRRGPCQCEFPQYCDSQRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	0	1
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	5.7	0.8844
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	10.7	0.8503
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	20.6	0.8814
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	21.7	0.8766
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	24.4	0.8669
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10022469 [exp]	28.0	0.8285
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10027357 [exp]	28.4	0.7950
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	28.7	0.8551
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10021266 [exp]	28.8	0.8579
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	28.8	0.8740

Compare expression of checked genes

Lus10037263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.