Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33565 109 / 5e-27 RING/U-box superfamily protein (.1) AT5G10380 105 / 6e-26 ATRING1, RING1 RING/U-box superfamily protein (.1) AT3G03550 104 / 4e-25 RING/U-box superfamily protein (.1) AT5G17600 103 / 6e-25 RING/U-box superfamily protein (.1) AT1G72220 103 / 1e-24 RING/U-box superfamily protein (.1) AT4G09110 102 / 1e-24 RING/U-box superfamily protein (.1) AT4G17905 96 / 2e-22 ATL4H RING/U-box superfamily protein (.1) AT4G09120 96 / 4e-22 RING/U-box superfamily protein (.1) AT2G27940 93 / 7e-22 RING/U-box superfamily protein (.1) AT1G23980 94 / 4e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035677 [exp] 488 / 1e-173 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10015901 [exp] 118 / 2e-30 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10013618 [exp] 112 / 2e-28 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10012745 [exp] 107 / 2e-26 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10004460 [exp] 100 / 3e-23 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10041134 [exp] 100 / 3e-23 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10000333 [exp] 100 / 3e-23 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 96 / 2e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015502 [exp] 96 / 8e-22 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093100 [exp] 150 / 7e-42 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 144 / 6e-40 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 120 / 8e-31 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 115 / 5e-29 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 115 / 5e-29 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 112 / 1e-27 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 108 / 2e-27 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 107 / 5e-26 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 104 / 4e-25 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 100 / 3e-23 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10037264 pacid=23152561 polypeptide=Lus10037264 locus=Lus10037264.g ID=Lus10037264.BGIv1.0 annot-version=v1.0 ATGAACAAGAACGACTGTCCACCACTGTCACCTTGCAGCTTACACTGCCCACACCTCTGCTTCAAACTCATCTTCCCTACTTCCTCTCCACCACCTCCTC CAACTCAACCTGATAACCACAACCACTTCTCCATTTCCACAGCAAGCTTCTCTCCGATTGTCATTGCCATAATCGGCATTCTCGTCAGCGCTCTCCTCCT TCTATCCTACTACATCCTCATCTCCAAGTACTGCCACCGCGGCCACACCAGCACCGCCAGCGCAGTCGAAGATGATCCCACCCATCGAAGCAGGGGAAGG AGGATTTCAAGACGGAACAATGTTATCCATGATCGTGCCACTGATGAAGTCAACACCGATCTTATGAACTCATCTCTTCATGAGCCGTGGCAGTGGCATG TCTCCCTTACCAGAGGGCTAGACCAGTCCCTGATCAAGTCAATCACGGCCTGCAAGTACAGCAAGGATTCAGGGTTGGTTGGTGAAGGAACAGAGCATTG CTCTGTTTGTTTGAGTGAGTTTCATGAAGGTGATACCTTGAGGCTGTTGCCCAAATGTGACCATGCTTTCCACCTCGACTGTATTGATACTTGGCTCACT ACACACTCCACCTGCCCTTTATGCCGCGCCAATATATTCTTCTTCGGCTCCGAAGATCATCCTTTGCCAACTACTGATGAAACTCACGCTGCTGCTGCTA CTAGTGATAATACAGAAAGGGTTCAGATTTTTGTAGATCAAGGATCAGAGGTTGAAGAAAGAAATTATCGGCGGCATCAGCAAGCTGTGAGGAGGTGTGT CTCTATGGATCACTTGGGCCATCGGACAAACAACAGCGGCCATGTCTGTGGTGTTGGGAGAGAGTCAAGGGTGGATGAAGAACAAGAAGGAGAGGAGGAA GAGGAATCGAAGCAGGGTAATTGTAGTCACAGCAGGAGTAATAGGAAACTTATGGATACACTGAAGAGATCATTTTCCAGTGGGAGATTATTCTATCTAA GCCGCCATGGAAACAGAGTTTGCCAACATCCCACCACATTCCCTTCGACAAGTAATGTTTAG
AA sequence Show only first row Show all	>Lus10037264 pacid=23152561 polypeptide=Lus10037264 locus=Lus10037264.g ID=Lus10037264.BGIv1.0 annot-version=v1.0 MNKNDCPPLSPCSLHCPHLCFKLIFPTSSPPPPPTQPDNHNHFSISTASFSPIVIAIIGILVSALLLLSYYILISKYCHRGHTSTASAVEDDPTHRSRGR RISRRNNVIHDRATDEVNTDLMNSSLHEPWQWHVSLTRGLDQSLIKSITACKYSKDSGLVGEGTEHCSVCLSEFHEGDTLRLLPKCDHAFHLDCIDTWLT THSTCPLCRANIFFFGSEDHPLPTTDETHAAAATSDNTERVQIFVDQGSEVEERNYRRHQQAVRRCVSMDHLGHRTNNSGHVCGVGRESRVDEEQEGEEE EESKQGNCSHSRSNRKLMDTLKRSFSSGRLFYLSRHGNRVCQHPTTFPSTSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	0	1
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	1.0	0.8999
AT5G42490			ATP binding microtubule motor ...		Lus10015449 [exp]	1.4	0.8582
AT3G51150			ATP binding microtubule motor ...		Lus10015448 [exp]	1.7	0.8499
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	3.9	0.8209
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	5.7	0.8375
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	8.0	0.7655
AT4G31370		FLA5	FASCICLIN-like arabinogalactan...		Lus10026223 [exp]	12.7	0.7944
					Lus10022875 [exp]	13.2	0.8110
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10025010 [exp]	14.4	0.7522
					Lus10002061 [exp]	14.5	0.7943

Compare expression of checked genes

Lus10037264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.