Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35410 218 / 2e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G09040 126 / 2e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G24770 120 / 2e-31 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 119 / 2e-31 CP31B chloroplast RNA-binding protein 31B (.1) AT1G60000 112 / 4e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 113 / 9e-29 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 104 / 7e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 89 / 2e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G01080 87 / 1e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G34110 72 / 8e-14 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035678 [exp] 508 / 0 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 119 / 6e-31 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041138 [exp] 116 / 5e-30 AT4G09040 201 / 7e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10016174 [exp] 115 / 1e-29 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10002222 [exp] 110 / 8e-28 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 108 / 2e-27 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10020945 [exp] 107 / 5e-27 AT4G09040 219 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10008721 [exp] 107 / 7e-27 AT4G09040 218 / 8e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023723 [exp] 106 / 4e-26 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G141300 [exp] 256 / 3e-84 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 123 / 1e-32 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.005G161000 [exp] 118 / 5e-31 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G340800 [exp] 116 / 2e-30 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 115 / 1e-29 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.016G090700 [exp] 111 / 1e-28 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 109 / 5e-28 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 105 / 3e-26 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 100 / 7e-24 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G065900 [exp] 96 / 6e-23 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10037265 pacid=23152259 polypeptide=Lus10037265 locus=Lus10037265.g ID=Lus10037265.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCAGCTCTGCATACACCCTTCTCCCGCTTCTCGGTTAACGACTCTCTAGCTCTTGCTTCCTCTTCCTATTCTTCTAATATCCAATCAGTTC CAAGAACCTTGCATTCCGCTCTATTCTTTAAACACTACACTGCCAGCTCCACCGGCTATCTTCCCCACCAAAGCTGCCCATTTTTCCCTCTCACAGTCAA TCTCCCGGCAACCACAAACCCGCGCCGGAGACGTTTCTGTGCTGTGCAGGAGACGGCGGTACTGGAGACGGAATCGGAGAAAACCGCGGAGACAGAAACG GAGGCGGAAAACCAGAAGAGGAAGCTATTTGTGCTCAATTTGTCATGGACCTTATCTGTTGCAGACATCAAAGAACTCTTCGGCCAGTGTGGGACTGTGA CGGATGTTGAGTTCATAAAGCGAGATAATGGGAAGAGCAAGGGTTATGCGTTTGTGACGATGGCTTCTGGAGCTGAAGCTCAAGCTGTTGTTGATAAATT CCACTCTCAGGAAGTGGAAGGGAGAGTTGTGACAGTGGAGTTTGCTAAGGGATTTAGGAGGAAGCGTCCTCCTACTCAGACCCCTAGTTCAGAGTCATCT CACAAGCTCTACGTGGCAAATCTGGCCTGGAAGGTCCGAGGCAGTCATCTTAAAGAGTTTTTCTCAACTGAAGCCAAACCAGTTACATCCCGAGTTGTAT TTGAAAATGGTGCTGGGGGAAGGTCAGCAGGATATGGGTTCGTCTCATTTGGCTCAAAGGAAGAAGCCGAGGCTGCCATTTCAGCTTTTGATGGCAAGGA GCTAATGGGACGTCCTATTCGTCTGAAATTCAGCGAACCAAAAGGAGCAGACAACTCAGAAAGCCAAACGCAGGAGACTGAAAACTCGGAGGCAAATGAT TCAGAAAGCCAAACGGAAGAGACAGAAGACTTGGAGGAGGCTGATAGATGA
AA sequence Show only first row Show all	>Lus10037265 pacid=23152259 polypeptide=Lus10037265 locus=Lus10037265.g ID=Lus10037265.BGIv1.0 annot-version=v1.0 MAAAALHTPFSRFSVNDSLALASSSYSSNIQSVPRTLHSALFFKHYTASSTGYLPHQSCPFFPLTVNLPATTNPRRRRFCAVQETAVLETESEKTAETET EAENQKRKLFVLNLSWTLSVADIKELFGQCGTVTDVEFIKRDNGKSKGYAFVTMASGAEAQAVVDKFHSQEVEGRVVTVEFAKGFRRKRPPTQTPSSESS HKLYVANLAWKVRGSHLKEFFSTEAKPVTSRVVFENGAGGRSAGYGFVSFGSKEEAEAAISAFDGKELMGRPIRLKFSEPKGADNSESQTQETENSEAND SESQTEETEDLEEADR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	0	1
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	1.7	0.9523
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	2.8	0.9298
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	4.0	0.9514
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	5.2	0.9348
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	6.0	0.9185
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	7.5	0.9219
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	11.5	0.8983
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	12.0	0.9151
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	13.0	0.8852
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	13.6	0.9276

Compare expression of checked genes

Lus10037265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.