Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 347 / 5e-116 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 299 / 2e-97 HXXXD-type acyl-transferase family protein (.1) AT2G19070 253 / 2e-79 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 221 / 3e-67 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 195 / 1e-57 HXXXD-type acyl-transferase family protein (.1) AT3G48720 194 / 6e-57 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G65450 171 / 2e-48 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G27620 159 / 7e-44 HXXXD-type acyl-transferase family protein (.1) AT1G03390 150 / 2e-40 HXXXD-type acyl-transferase family protein (.1) AT5G17540 140 / 1e-36 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010786 [exp] 434 / 3e-150 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 433 / 6e-150 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 358 / 1e-120 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 305 / 1e-99 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 285 / 2e-91 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 282 / 2e-90 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 281 / 1e-89 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10026097 [exp] 274 / 8e-88 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 267 / 2e-84 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104700 [exp] 390 / 5e-133 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 389 / 1e-132 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 357 / 4e-120 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 357 / 5e-120 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 357 / 5e-120 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 353 / 1e-118 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 275 / 4e-88 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 256 / 1e-80 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 232 / 1e-71 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 216 / 3e-65 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10037266 pacid=23152438 polypeptide=Lus10037266 locus=Lus10037266.g ID=Lus10037266.BGIv1.0 annot-version=v1.0 ATGGAGTCGACGATGATTAGGGTGAAAGAGAGGAGTCTGGTGAGGCCGGCGGAAGAGGTCATGGCCAGTAAGGAGGAGCGGATGTGGCTGTCCAACATGG ATCTCCTGCATCCCAAAACACACGTCAGAACTATCTATGTTTACAAATCAGATCACCCAAGTTCATTAGTCTTTGACCCCAAAGTGCTGAAAGATGCTCT GGGGAAGGCCTTGGTGCCCTTCTACCCCATGGCCGGCAGACTTGTTGAAGGCGGCGCCGGCGGGAGGGTGGAACTTGAGTGTAACGGCGAAGGAGTGTTG TTTCTTGAGGCGGAAGCTGACGTGTCGGTGGATGAGCTTGGGGAGTTCTTGCCGAGTAATGGTTCTCAGGACCAGTTGGTCTCCCAGCTGGTTCCTTCCG TTGATTACTCCAAAGCCATTTCTTCTTTCCCTCTCTGCCTTCTCCAGGTAACAAGGTTTAAATGCGGAGGAATCTGTATCGGAATAGGAATCAACCACAC CGTAGCTGACGGCCAGTCAGCACTTAGTTTCATCAACACTTGGTCCAACATCGCGCGCTGCGGCTCCTCCGACGTCGCAACCATCTTCTCGCCATTTATG GACCGAACCATCCTCCGAGCGCGAAATCCACCCGCTCCCAAGTTTCGCCACACAGAGTACAACCCTCACCCTACCATGATCCACAACACCTCGAAAGGCG GCCCTCCTAGAGTTGAAATCTTAAACATCAAGCCCCACCAAATCGACACCCTCAAAGAGAATGCAATTCCAAGGAACGATCCCGCCCTTAGATACAGCAC CTACGAGATCCTGGCCGCGCATATCTGGCGTTGTGTGACCAAGGCTCGTAGCCTGGACCGCCAACAGCCCACGACGCTGCTGATATCGGTGGATGGGCGG TCCAGGCTGAACCCTCCTGTCCCTCACGGCTATTTCGGGAATGTCATCTTCCACACCACCCCTACTGCCCTTGCAGGGGAGCTCGTGTCCGAGGCGTTGG GTCAGACGGTGGAGAGGATTCGAAAGGCGATAAGTCGAATGGACGACGAGTACTTGAGATCGGCCATCGACTACTTGGAGGATCCTGATGTGAAATACAC ACCGAGAACTCCTTCCCCTAACGTGAAGTTGGTGAGCTGGATACGGCTTCCGTTCAAGAGTGCTGATTTCGGGTGGGGAGCTCCGTCTCTGACGCGTCAG GTGAGTTTCGAAGAAGGGAAAGGTCATCTCTTGCCGAGGAATGATGATGGCAGTCTGTCTTTGGCCATTTGCTTGGAGGCTGATGTTATGCTTGCCTTTA AGAACCTGATATATGATGTTTGA
AA sequence Show only first row Show all	>Lus10037266 pacid=23152438 polypeptide=Lus10037266 locus=Lus10037266.g ID=Lus10037266.BGIv1.0 annot-version=v1.0 MESTMIRVKERSLVRPAEEVMASKEERMWLSNMDLLHPKTHVRTIYVYKSDHPSSLVFDPKVLKDALGKALVPFYPMAGRLVEGGAGGRVELECNGEGVL FLEAEADVSVDELGEFLPSNGSQDQLVSQLVPSVDYSKAISSFPLCLLQVTRFKCGGICIGIGINHTVADGQSALSFINTWSNIARCGSSDVATIFSPFM DRTILRARNPPAPKFRHTEYNPHPTMIHNTSKGGPPRVEILNIKPHQIDTLKENAIPRNDPALRYSTYEILAAHIWRCVTKARSLDRQQPTTLLISVDGR SRLNPPVPHGYFGNVIFHTTPTALAGELVSEALGQTVERIRKAISRMDDEYLRSAIDYLEDPDVKYTPRTPSPNVKLVSWIRLPFKSADFGWGAPSLTRQ VSFEEGKGHLLPRNDDGSLSLAICLEADVMLAFKNLIYDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	0	1
AT1G74160			unknown protein		Lus10021148 [exp]	3.0	0.8825
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	3.5	0.8668
AT5G16030			unknown protein		Lus10033537 [exp]	4.7	0.8825
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	5.1	0.8350
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	6.3	0.8616
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	6.6	0.8373
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	11.7	0.8573
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	13.4	0.8390
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	13.7	0.8423
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	15.0	0.8771

Compare expression of checked genes

Lus10037266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.